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RNAinteractMAPK 1.0.1
Bernd Fischer
Snapshot Date: 2011-10-18 23:15:16 -0700 (Tue, 18 Oct 2011)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/RNAinteractMAPK
Last Changed Rev: 1721 / Revision: 1763
Last Changed Date: 2011-09-02 05:47:26 -0700 (Fri, 02 Sep 2011)
lamb1 Linux (openSUSE 11.3) / x86_64  ERROR  skipped 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  ERROR  skipped  skipped 
pelham Mac OS X Leopard (10.5.8) / i386 [ ERROR ] skipped  skipped 

Summary

Package: RNAinteractMAPK
Version: 1.0.1
Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data RNAinteractMAPK
StartedAt: 2011-10-19 01:00:16 -0700 (Wed, 19 Oct 2011)
EndedAt: 2011-10-19 01:03:15 -0700 (Wed, 19 Oct 2011)
EllapsedTime: 179.3 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

* checking for file 'RNAinteractMAPK/DESCRIPTION' ... OK
* preparing 'RNAinteractMAPK':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* creating vignettes ... ERROR
Loading required package: fields
Loading required package: spam
Package 'spam' is loaded. Spam version 0.27-0 (2011-08-17).
Type demo( spam) for some demos, help( Spam) for an overview
of this package.
Help for individual functions is optained by adding the
suffix '.spam' to the function name, e.g. 'help(chol.spam)'.

Attaching package: 'spam'

The following object(s) are masked from 'package:base':

    backsolve, forwardsolve, norm

Loading required package: sparseLDA
Loading required package: lars
Loading required package: elasticnet
Loading required package: MASS
Loading required package: mda
Loading required package: class
Loading required package: RNAinteract
Loading required package: abind
Loading required package: locfit
Loading required package: akima
Loading required package: lattice
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Loading Tcl/Tk interface ... done
It looks like 384-well plates are used. nrow=16 ncol=24
If this is not correct, specify the pdim argument and re-run.

Error: processing vignette 'RNAinteractMAPK.Rnw' failed with diagnostics:
 chunk 11 (label = compute p-values) 
Error in computePValues(Dmel2PPMAPK, p.adjust.function = p.adj.fct, verbose = FALSE) : 
  unused argument(s) (p.adjust.function = p.adj.fct)
Execution halted