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GenomicFeatures.Hsapiens.UCSC.hg18 0.1.3
Biocore Data Team
Snapshot Date: 2011-02-01 00:25:05 -0800 (Tue, 01 Feb 2011)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/GenomicFeatures.Hsapiens.UCSC.hg18
Last Changed Rev: 1378 / Revision: 1435
Last Changed Date: 2010-10-28 18:19:25 -0700 (Thu, 28 Oct 2010)
lamb1 Linux (openSUSE 11.3) / x86_64  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 
petty Mac OS X Snow Leopard (10.6.4) / i386  OK  OK  OK 

Summary

Package: GenomicFeatures.Hsapiens.UCSC.hg18
Version: 0.1.3
Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch GenomicFeatures.Hsapiens.UCSC.hg18_0.1.3.tar.gz
StartedAt: 2011-02-01 03:20:24 -0800 (Tue, 01 Feb 2011)
EndedAt: 2011-02-01 03:27:38 -0800 (Tue, 01 Feb 2011)
EllapsedTime: 433.9 seconds
RetCode: 0
Status:  OK 
CheckDir: GenomicFeatures.Hsapiens.UCSC.hg18.Rcheck
Warnings: 0

Command output

* using log directory ‘/Users/biocbuild/bbs-2.8-data-experiment/meat/GenomicFeatures.Hsapiens.UCSC.hg18.Rcheck’
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘GenomicFeatures.Hsapiens.UCSC.hg18/DESCRIPTION’ ... OK
* this is package ‘GenomicFeatures.Hsapiens.UCSC.hg18’ version ‘0.1.3’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘GenomicFeatures.Hsapiens.UCSC.hg18’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking PDF version of manual ... OK

GenomicFeatures.Hsapiens.UCSC.hg18.Rcheck/00install.out:

* installing *source* package ‘GenomicFeatures.Hsapiens.UCSC.hg18’ ...
** R
** inst
** preparing package for lazy loading
Loading required package: IRanges

Attaching package: 'IRanges'

The following object(s) are masked from 'package:base':

    Map, cbind, eval, mapply, order, paste, pmax, pmax.int, pmin,
    pmin.int, rbind, rep.int, table

Loading required package: GenomicRanges
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (GenomicFeatures.Hsapiens.UCSC.hg18)

GenomicFeatures.Hsapiens.UCSC.hg18.Rcheck/GenomicFeatures.Hsapiens.UCSC.hg18-Ex.timings:

nameusersystemelapsed
GenomicFeatures.Hsapiens.UCSC.hg18_dbconn 6.764 0.87443.236
geneHuman 5.524 0.74116.595