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Package 422/444HostnameOS / ArchBUILDCHECKBUILD BIN
TEQC 0.99.2
Manuela Hummel
Snapshot Date: 2011-03-17 11:16:30 -0700 (Thu, 17 Mar 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/TEQC
Last Changed Rev: 53674 / Revision: 53825
Last Changed Date: 2011-03-14 01:33:53 -0700 (Mon, 14 Mar 2011)
lamb1 Linux (openSUSE 11.3) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.6) / i386  OK [ OK ] OK 

Summary

Package: TEQC
Version: 0.99.2
Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch TEQC_0.99.2.tar.gz
StartedAt: 2011-03-17 17:41:47 -0700 (Thu, 17 Mar 2011)
EndedAt: 2011-03-17 17:43:31 -0700 (Thu, 17 Mar 2011)
EllapsedTime: 104.2 seconds
RetCode: 0
Status:  OK 
CheckDir: TEQC.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.8-bioc/meat/TEQC.Rcheck'
* using R version 2.13.0 Under development (unstable) (2011-03-06 r54683)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'TEQC/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'TEQC' version '0.99.2'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'TEQC' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

TEQC.Rcheck/00install.out:

* installing *source* package 'TEQC' ...
** R
** inst
** preparing package for lazy loading

Attaching package: 'IRanges'

The following object(s) are masked from 'package:base':

    Map, cbind, eval, intersect, mapply, order, paste, pmax, pmax.int,
    pmin, pmin.int, rbind, rep.int, setdiff, table, union

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (TEQC)

TEQC.Rcheck/TEQC-Ex.timings:

nameusersystemelapsed
chrom.barplot0.4900.0080.497
coverage.GC1.8110.0121.822
coverage.correlation2.4980.0132.511
coverage.density1.3430.0091.352
coverage.hist1.3360.0061.342
coverage.plot1.3880.0131.603
coverage.target1.3100.0081.318
coverage.targetlength.plot1.7310.0111.742
coverage.uniformity1.4080.0121.420
covered.k1.3570.0071.363
duplicates.barplot7.5230.0377.560
fraction.reads.target0.6040.0030.607
fraction.target0.1630.0010.163
get.baits0.0240.0010.026
get.reads0.1930.0020.195
get.targets0.1650.0010.166
insert.size.hist2.8400.0092.850
make.wigfiles1.4160.0081.425
reads2pairs2.8710.0102.882
readsPerTarget0.8970.0050.901