Package: qrqc

Version: 1.0.0

Command: D:\biocbld\bbs-2.8-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch qrqc_1.0.0.tar.gz

StartedAt: 2011-10-20 16:04:31 -0700 (Thu, 20 Oct 2011)

EndedAt: 2011-10-20 16:06:17 -0700 (Thu, 20 Oct 2011)

EllapsedTime: 105.9 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: qrqc.Rcheck

Warnings: 1

* using log directory 'D:/biocbld/bbs-2.8-bioc/meat/qrqc.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'qrqc/DESCRIPTION' ... OK
* this is package 'qrqc' version '1.0.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'qrqc' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running 'test-functions.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... WARNING
Package vignette(s) without corresponding PDF:
   qrqc.Rnw

* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  'D:/biocbld/bbs-2.8-bioc/meat/qrqc.Rcheck/00check.log'
for details

* installing *source* package 'qrqc' ...
** libs
x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.8-B/R/include"    -I"D:/biocbld/bbs-2.8-bioc/R/library/Rsamtools/include"      -O2 -Wall  -std=gnu99 -c R_init_io.c -o R_init_io.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.8-B/R/include"    -I"D:/biocbld/bbs-2.8-bioc/R/library/Rsamtools/include"      -O2 -Wall  -std=gnu99 -c io.c -o io.o
x86_64-w64-mingw32-gcc -shared -s -static-libgcc -o qrqc.dll tmp.def R_init_io.o io.o -lRzlib -LD:/biocbld/BBS-2˜1.8-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-2.8-bioc/meat/qrqc.Rcheck/qrqc/libs/x64
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (qrqc)

name	user	system	elapsed
FASTASummary-class	0	0	0
FASTQSummary-class	0	0	0
SequenceSummary-class	0	0	0
makeReport	0.80	0.16	0.95
plotBases	0.34	0.00	0.34
plotGC	0.28	0.00	0.28
plotQuals	0.43	0.00	0.43
plotSeqLengths	0.43	0.00	0.43
readSeqFile	0.28	0.02	0.30