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Package 326/444HostnameOS / ArchBUILDCHECKBUILD BIN
plw 1.11.1
Magnus Astrand
Snapshot Date: 2011-03-17 11:16:30 -0700 (Thu, 17 Mar 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/plw
Last Changed Rev: 52481 / Revision: 53825
Last Changed Date: 2011-02-04 15:37:59 -0800 (Fri, 04 Feb 2011)
lamb1 Linux (openSUSE 11.3) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.6) / i386  OK  OK [ OK ]

Summary

Package: plw
Version: 1.11.1
Command: /Users/biocbuild/BBS/utils/build-universal.sh plw_1.11.1.tar.gz /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R plw.buildbin-libdir
StartedAt: 2011-03-17 18:04:16 -0700 (Thu, 17 Mar 2011)
EndedAt: 2011-03-17 18:04:22 -0700 (Thu, 17 Mar 2011)
EllapsedTime: 5.8 seconds
RetCode: 0
Status:  OK 
PackageFile: plw_1.11.1.tgz
PackageFileSize: 941.2 KiB

Command output

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --library=plw.buildbin-libdir plw_1.11.1.tar.gz'
>>>>>>> 

* installing *source* package 'plw' ...
** libs
*** arch - i386
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c SpecialFunctions.c -o SpecialFunctions.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c SpecialOptim.c -o SpecialOptim.o
SpecialOptim.c: In function 'SpecialOptim':
SpecialOptim.c:86: warning: ordered comparison of pointer with integer zero
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o plw.so SpecialFunctions.o SpecialOptim.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.8-bioc/meat/plw.buildbin-libdir/plw/libs/i386
*** arch - ppc
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c SpecialFunctions.c -o SpecialFunctions.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c SpecialOptim.c -o SpecialOptim.o
SpecialOptim.c: In function 'SpecialOptim':
SpecialOptim.c:86: warning: ordered comparison of pointer with integer zero
gcc -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o plw.so SpecialFunctions.o SpecialOptim.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.8-bioc/meat/plw.buildbin-libdir/plw/libs/ppc
*** arch - x86_64
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c SpecialFunctions.c -o SpecialFunctions.o
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c SpecialOptim.c -o SpecialOptim.o
SpecialOptim.c: In function 'SpecialOptim':
SpecialOptim.c:86: warning: ordered comparison of pointer with integer zero
gcc -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o plw.so SpecialFunctions.o SpecialOptim.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.8-bioc/meat/plw.buildbin-libdir/plw/libs/x86_64
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (plw)


>>>>>>> 
>>>>>>> FIXING LINKS FOR plw.buildbin-libdir/plw/libs/i386/plw.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgcc_s.1.dylib" "plw.buildbin-libdir/plw/libs/i386/plw.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgfortran.2.dylib" "plw.buildbin-libdir/plw/libs/i386/plw.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.5.2.dylib" "plw.buildbin-libdir/plw/libs/i386/plw.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.dylib" "plw.buildbin-libdir/plw/libs/i386/plw.so"


>>>>>>> 
>>>>>>> FIXING LINKS FOR plw.buildbin-libdir/plw/libs/ppc/plw.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgcc_s.1.dylib" "plw.buildbin-libdir/plw/libs/ppc/plw.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgfortran.2.dylib" "plw.buildbin-libdir/plw/libs/ppc/plw.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.5.2.dylib" "plw.buildbin-libdir/plw/libs/ppc/plw.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.dylib" "plw.buildbin-libdir/plw/libs/ppc/plw.so"


>>>>>>> 
>>>>>>> FIXING LINKS FOR plw.buildbin-libdir/plw/libs/x86_64/plw.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgcc_s.1.dylib" "plw.buildbin-libdir/plw/libs/x86_64/plw.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgfortran.2.dylib" "plw.buildbin-libdir/plw/libs/x86_64/plw.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.5.2.dylib" "plw.buildbin-libdir/plw/libs/x86_64/plw.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.dylib" "plw.buildbin-libdir/plw/libs/x86_64/plw.so"