Package: graph

Version: 1.30.0

Command: E:\biocbld\bbs-2.8-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch graph_1.30.0.tar.gz

StartedAt: 2011-10-20 15:26:03 -0700 (Thu, 20 Oct 2011)

EndedAt: 2011-10-20 15:27:17 -0700 (Thu, 20 Oct 2011)

EllapsedTime: 73.9 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: graph.Rcheck

Warnings: 1

* using log directory 'E:/biocbld/bbs-2.8-bioc/meat/graph.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'graph/DESCRIPTION' ... OK
* this is package 'graph' version '1.30.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... WARNING
Subdirectory 'src' contains:
  BioC_graph.dll
These are unlikely file names for src files.
* checking whether package 'graph' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running 'graph_unit_tests.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  'E:/biocbld/bbs-2.8-bioc/meat/graph.Rcheck/00check.log'
for details

* installing *source* package 'graph' ...
** libs
gcc -I"E:/biocbld/BBS-2˜1.8-B/R/include"          -O3 -Wall  -std=gnu99 -c graph.c -o graph.o
gcc -shared -s -static-libgcc -o graph.dll tmp.def graph.o -LE:/biocbld/BBS-2˜1.8-B/R/bin/i386 -lR
mv graph.dll BioC_graph.dll
installing to E:/biocbld/bbs-2.8-bioc/meat/graph.Rcheck/graph/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (graph)

name	user	system	elapsed
DFS	0.04	0.00	0.05
IMCA	0.27	0.03	0.31
MAPKsig	0.14	0.00	0.14
MultiGraph-class	0.11	0.00	0.11
acc-methods	0.01	0.00	0.01
addEdge	0.02	0.00	0.02
addNode	0.01	0.00	0.01
adj-methods	0.02	0.00	0.02
apoptosisGraph	0.02	0.01	0.03
attrData-class	0	0	0
aveNumEdges	0.01	0.00	0.02
biocRepos	0	0	0
boundary	0.02	0.00	0.01
buildRepDepGraph	0	0	0
calcProb	0	0	0
calcSumProb	0.01	0.00	0.02
clearNode	0	0	0
clusterGraph-class	0.02	0.00	0.01
clusteringCoefficient-methods	0	0	0
combineNodes	0.05	0.00	0.05
distGraph-class	0	0	0
duplicatedEdges	0.00	0.02	0.02
edgeMatrix	0.01	0.00	0.01
edgeSets	0.05	0.00	0.05
edgeWeights	0	0	0
fromGXL-methods	0.47	0.01	0.51
graph-class	0.01	0.00	0.02
graph2SparseM	0.24	0.00	0.23
graphAM-class	0.01	0.00	0.02
graphBAM-class	0.09	0.00	0.09
graphExamples	0.00	0.02	0.02
graphNEL-class	0	0	0
inEdges	0	0	0
leaves	0.00	0.01	0.02
listEdges	0.02	0.00	0.01
matrix2Graph	0.03	0.00	0.03
mostEdges	0.01	0.00	0.02
numNoEdges	0.02	0.00	0.01
pancrCaIni	0.09	0.00	0.10
randomEGraph	0	0	0
randomGraph	0	0	0
randomNodeGraph	0.01	0.00	0.02
removeEdge	0	0	0
removeNode	0.02	0.00	0.02
renderInfo-class	0	0	0
reverseEdgeDirections	0	0	0
simpleEdge-class	0	0	0
standardLabeling	0.11	0.00	0.11
subGraph	0	0	0
toDotR-methods	0.04	0.00	0.09
ugraph	0.02	0.00	0.02
validGraph	0.01	0.00	0.02