Package: Rmagpie

Version: 1.8.0

Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch Rmagpie_1.8.0.tar.gz

StartedAt: 2011-10-20 17:01:58 -0700 (Thu, 20 Oct 2011)

EndedAt: 2011-10-20 17:04:27 -0700 (Thu, 20 Oct 2011)

EllapsedTime: 148.8 seconds

RetCode: 0

Status:  OK

CheckDir: Rmagpie.Rcheck

Warnings: 0

* using log directory '/Users/biocbuild/bbs-2.8-bioc/meat/Rmagpie.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'Rmagpie/DESCRIPTION' ... OK
* this is package 'Rmagpie' version '1.8.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'Rmagpie' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under inst/doc ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'Rmagpie' ...
** R
** data
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (Rmagpie)

name	user	system	elapsed
classifyNewSamples-methods	3.492	0.194	3.702
experiment-class	0.103	0.013	0.116
finalClassifier-class	0.166	0.013	0.179
findFinalClassifier-methods	0.359	0.032	0.395
geneSubsets-class	0.018	0.001	0.018
getDataset-methods	0.022	0.002	0.024
getFeatureSelectionOptions-methods	0.019	0.002	0.020
getFinalClassifier	0.339	0.116	0.456
getResults-methods	10.790	0.357	11.168
plotErrorsFoldTwoLayerCV-methods	10.711	0.030	10.752
plotErrorsRepeatedOneLayerCV	1.949	0.009	1.965
plotErrorsSummaryOneLayerCV-methods	1.993	0.009	2.005
rankedGenesImg-methods	0.000	0.000	0.001
runOneLayerExtCV-methods	1.674	0.008	1.698
runTwoLayerExtCV-methods	19.421	0.068	19.656
setDataset-methods	0.000	0.001	0.001
setFeatureSelectionOptions-methods	0.032	0.002	0.035
thresholds-class	0.003	0.000	0.004
vV70genes	0.010	0.001	0.011