Package: RbcBook1

Version: 1.20.0

Command: D:\biocbld\bbs-2.8-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch RbcBook1_1.20.0.tar.gz

StartedAt: 2011-10-20 16:08:15 -0700 (Thu, 20 Oct 2011)

EndedAt: 2011-10-20 16:08:46 -0700 (Thu, 20 Oct 2011)

EllapsedTime: 31.5 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: RbcBook1.Rcheck

Warnings: 2

* using log directory 'D:/biocbld/bbs-2.8-bioc/meat/RbcBook1.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'RbcBook1/DESCRIPTION' ... OK
* this is package 'RbcBook1' version '1.20.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'RbcBook1' can be installed ... WARNING
Found the following significant warnings:
  Warning: LazyLoad = FALSE is deprecated
See 'D:/biocbld/bbs-2.8-bioc/meat/RbcBook1.Rcheck/00install.out' for details.
* checking installed package size ... NOTE
  installed size is  7.8Mb
  sub-directories of 1Mb or more:
    data   7.6Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
bcStangle: possible error in grep("chapter{", txt,
  extended = FALSE): unused argument(s) (extended =
  FALSE)
checkPackage: possible error in sub("Rpackage{", "",
  sub("}", "", unique(p), extended = FALSE), extended
  = FALSE): unused argument(s) (extended = FALSE)
checkPackage: possible error in sub("}", "",
  unique(p), extended = FALSE): unused argument(s)
  (extended = FALSE)
checkRnw: possible error in
  grep("caption.*%.*[a-zA-Z]", txt, extended =
  FALSE): unused argument(s) (extended = FALSE)
remapAff: no visible binding for global variable
  'hgu95av2SYMBOL'
* checking Rd files ... NOTE
prepare_Rd: requireAllBook1.Rd:9-10: Dropping empty section \arguments
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... NOTE
'library' or 'require' call not declared from: rpart
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... WARNING
Package vignette(s) without corresponding PDF:
   RbcBook1.Rnw

* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There were 2 warnings, see
  'D:/biocbld/bbs-2.8-bioc/meat/RbcBook1.Rcheck/00check.log'
for details

* installing *source* package 'RbcBook1' ...
** R
** data
** inst
Warning: LazyLoad = FALSE is deprecated
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (RbcBook1)

name	user	system	elapsed
bcStangle	0	0	0
bcSweave	0	0	0
bcr	0.64	0.02	0.65
checkVerbatimLines	0.00	0.00	0.11
imageSize	0	0	0
perf	0	0	0
requireAllBook1	0	0	0
rpart2gNEL	0.12	0.03	0.25