MANOR 1.23.2
Pierre Neuvial
| Snapshot Date: 2011-03-17 11:16:30 -0700 (Thu, 17 Mar 2011) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/MANOR | | Last Changed Rev: 52478 / Revision: 53825 | | Last Changed Date: 2011-02-04 15:35:36 -0800 (Fri, 04 Feb 2011) |
| lamb1 | Linux (openSUSE 11.3) / x86_64 | ERROR | skipped | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | ERROR | skipped | skipped |
| gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | ERROR | skipped | skipped |
| pelham | Mac OS X Leopard (10.5.8) / i386 | ERROR | skipped | skipped |
| petty | Mac OS X Snow Leopard (10.6.6) / i386 | [ ERROR ] | skipped | skipped |
* checking for file 'MANOR/DESCRIPTION' ... OK
* preparing 'MANOR':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* creating vignettes ... ERROR
Loading required package: MANOR
Loading required package: GLAD
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Have fun with GLAD
For smoothing it is possible to use either
the AWS algorithm (Polzehl and Spokoiny, 2002)
or the HaarSeg algorithm (Ben-Yaacov and Eldar, Bioinformatics, 2008)
If you use the package with AWS, please cite:
Hupe et al. (Bioinformatics, 2004) and Polzehl and Spokoiny (2002)
If you use the package with HaarSeg, please cite:
Hupe et al. (Bioinformatics, 2004) and (Ben-Yaacov and Eldar, Bioinformatics, 2008)
For fast computation it is recommanded to use
the daglad function with smoothfunc=haarseg
######################################################################################
New options are available in daglad: see help for details.
Attaching package: 'MANOR'
The following object(s) are masked from 'package:base':
norm
************************************************
*** Spatial Classification with EM algorithm ***
************************************************
Data : nb points = 7392
grid size = 88 rows, 84 columns
Neighborhood system :
max neighb = 4
Default 1st-order neighbors (horizontal and vertical)
NEM parameters :
beta = 1.00 | nk = 5
Computing initial partition (sort variable 1) ...
Iterations : 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173
criterion NEM = 19782.898 / Ps-Like = 5035.969 / Lmix = 9250.229
NEM converged after 173 iterations
Error: processing vignette 'MANOR.Rnw' failed with diagnostics:
chunk 25
Error in daglad.profileCGH(profileCGH, smoothfunc = "lawsglad", lkern = "Exponential", :
Error in daglad: msize must be lower than region.size
Execution halted