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Package 180/467HostnameOS / ArchBUILDCHECKBUILD BIN
GeneSelector 2.2.0
Martin Slawski
Snapshot Date: 2011-10-20 07:20:33 -0700 (Thu, 20 Oct 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_8/madman/Rpacks/GeneSelector
Last Changed Rev: 54800 / Revision: 59457
Last Changed Date: 2011-04-13 15:27:35 -0700 (Wed, 13 Apr 2011)
lamb1 Linux (openSUSE 11.3) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: GeneSelector
Version: 2.2.0
Command: /home/biocbuild/bbs-2.8-bioc/R/bin/R CMD check --no-vignettes --timings GeneSelector_2.2.0.tar.gz
StartedAt: 2011-10-20 12:48:58 -0700 (Thu, 20 Oct 2011)
EndedAt: 2011-10-20 12:49:58 -0700 (Thu, 20 Oct 2011)
EllapsedTime: 59.4 seconds
RetCode: 0
Status:  OK 
CheckDir: GeneSelector.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.8-bioc/meat/GeneSelector.Rcheck’
* using R version 2.13.2 (2011-09-30)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘GeneSelector/DESCRIPTION’ ... OK
* this is package ‘GeneSelector’ version ‘2.2.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘GeneSelector’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

GeneSelector.Rcheck/00install.out:

* installing *source* package ‘GeneSelector’ ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.8-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -c kendall.c -o kendall.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.8-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -c mcfour.c -o mcfour.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.8-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -c mct.c -o mct.o
gcc -std=gnu99 -shared -L/usr/local/lib64 -o GeneSelector.so kendall.o mcfour.o mct.o -L/home/biocbuild/bbs-2.8-bioc/R/lib -lR
installing to /loc/home/biocbuild/bbs-2.8-bioc/meat/GeneSelector.Rcheck/GeneSelector/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (GeneSelector)

GeneSelector.Rcheck/GeneSelector-Ex.timings:

nameusersystemelapsed
AggregateMC0.9880.0161.007
AggregatePenalty1.0280.0081.037
AggregateSVD0.5120.0000.516
AggregateSimple0.5280.0040.533
GeneSelector3.1960.0443.244
GenerateBootMatrix0.0880.0040.090
GenerateFoldMatrix0.0680.0000.073
GetStabilityDistance0.3320.0000.435
GetStabilityOverlap0.3880.0000.527
GetStabilityUnion0.4360.0000.439
HeatmapRankings2.8680.0282.910
MergeMethods2.7520.0282.787
RankingBaldiLong0.0680.0000.069
RankingEbam0.6240.0080.631
RankingFC0.0200.0000.019
RankingFoxDimmic0.0480.0000.048
RankingLimma0.8600.0080.873
RankingPermutation0.9330.0040.936
RankingSam2.3800.0442.457
RankingShrinkageT0.2440.0080.256
RankingSoftthresholdT0.1720.0000.172
RankingTstat0.020.000.02
RankingWelchT0.0200.0000.023
RankingWilcEbam0.2920.0120.307
RankingWilcoxon0.2160.0040.220
RepeatRanking1.9160.0121.934
toydata0.0120.0040.014