Package: GeneGA

Version: 1.1.2

Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch GeneGA_1.1.2.tar.gz

StartedAt: 2011-03-17 16:21:14 -0700 (Thu, 17 Mar 2011)

EndedAt: 2011-03-17 16:23:20 -0700 (Thu, 17 Mar 2011)

EllapsedTime: 125.9 seconds

RetCode: 0

Status:  OK

CheckDir: GeneGA.Rcheck

Warnings: 0

* using log directory '/Users/biocbuild/bbs-2.8-bioc/meat/GeneGA.Rcheck'
* using R version 2.13.0 Under development (unstable) (2011-03-06 r54683)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'GeneGA/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'GeneGA' version '1.1.2'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GeneGA' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
GeneCodon: no visible binding for global variable 'wSet'
GeneGA: no visible binding for global variable 'wSet'
GeneGA_internal: no visible binding for global variable 'wSet'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'GeneGA' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: GeneR

Attaching package: 'GeneR'

The following object(s) are masked from 'package:utils':

    relist


Attaching package: 'seqinr'

The following object(s) are masked from 'package:GeneRfold':

    dotPlot

The following object(s) are masked from 'package:GeneR':

    translate


  hash-2.0.1 provided by Open Data.
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

  hash-2.0.1 provided by Open Data.

* DONE (GeneGA)

name	user	system	elapsed
GeneCodon	0.139	0.001	0.141
GeneFoldGA	8.790	0.014	8.805
GeneGA-package	9.083	0.008	9.092
GeneGA	68.300	0.025	68.327
plotGeneGA-methods	8.922	0.010	8.931
wSet	0.006	0.000	0.006