GSVA 1.0.1
Justin Guinney
| Snapshot Date: 2011-10-20 07:20:33 -0700 (Thu, 20 Oct 2011) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_8/madman/Rpacks/GSVA | | Last Changed Rev: 56241 / Revision: 59457 | | Last Changed Date: 2011-06-16 15:04:11 -0700 (Thu, 16 Jun 2011) |
| lamb1 | Linux (openSUSE 11.3) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| gewurz | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | WARNINGS | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | [ ERROR ] |
>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --library=GSVA.buildbin-libdir GSVA_1.0.1.tar.gz'
>>>>>>>
* installing *source* package 'GSVA' ...
checking for gcc... gcc-4.2 -arch i386 -std=gnu99
checking for C compiler default output file name... rm: a.out.dSYM: is a directory
a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc-4.2 -arch i386 -std=gnu99 accepts -g... yes
checking for gcc-4.2 -arch i386 -std=gnu99 option to accept ISO C89... none needed
checking for gsl_stats_sd in -lgsl... yes
checking how to run the C preprocessor... gcc-4.2 -arch i386 -std=gnu99 -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... rm: conftest.dSYM: is a directory
rm: conftest.dSYM: is a directory
yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking gsl/gsl_version.h usability... yes
checking gsl/gsl_version.h presence... yes
checking for gsl/gsl_version.h... yes
checking if GSL version >= 1.12... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
*** arch - i386
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386 -I/usr/local/include -I. -I. -I/usr/local/include -g -O2 -Wall -pedantic -Wall -pedantic -fPIC -g -O2 -Wall -pedantic -c assess_density_test.c -o assess_density_test.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386 -I/usr/local/include -I. -I. -I/usr/local/include -g -O2 -Wall -pedantic -Wall -pedantic -fPIC -g -O2 -Wall -pedantic -c ks_test.c -o ks_test.o
ks_test.c: In function 'ks_sample':
ks_test.c:22: warning: unused variable 'mx_value'
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386 -I/usr/local/include -I. -I. -I/usr/local/include -g -O2 -Wall -pedantic -Wall -pedantic -fPIC -g -O2 -Wall -pedantic -c register_cmethods.c -o register_cmethods.o
gcc-4.2 -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o GSVA.so assess_density_test.o ks_test.o register_cmethods.o -lgsl -lgslcblas -lgsl -lgslcblas -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.8-bioc/meat/GSVA.buildbin-libdir/GSVA/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
* DONE (GSVA)
>>>>>>>
>>>>>>> FIXING LINKS FOR GSVA.buildbin-libdir/GSVA/libs/i386/GSVA.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgcc_s.1.dylib" "GSVA.buildbin-libdir/GSVA/libs/i386/GSVA.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgfortran.2.dylib" "GSVA.buildbin-libdir/GSVA/libs/i386/GSVA.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.5.2.dylib" "GSVA.buildbin-libdir/GSVA/libs/i386/GSVA.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.dylib" "GSVA.buildbin-libdir/GSVA/libs/i386/GSVA.so"
>>>>>>>
>>>>>>> INSTALLATION OF ppc LIBS WITH 'R_ARCH=/ppc R CMD INSTALL --preclean --library=GSVA.buildbin-libdir --libs-only GSVA_1.0.1.tar.gz'
>>>>>>>
* installing *source* package 'GSVA' ...
checking for gcc... gcc-4.2 -arch ppc -std=gnu99
checking for C compiler default output file name... rm: a.out.dSYM: is a directory
a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc-4.2 -arch ppc -std=gnu99 accepts -g... yes
checking for gcc-4.2 -arch ppc -std=gnu99 option to accept ISO C89... none needed
checking for gsl_stats_sd in -lgsl... no
configure: error: Cannot find Gnu Scientific Library.
ERROR: configuration failed for package 'GSVA'
* removing '/Users/biocbuild/bbs-2.8-bioc/meat/GSVA.buildbin-libdir/GSVA'
* restoring previous '/Users/biocbuild/bbs-2.8-bioc/meat/GSVA.buildbin-libdir/GSVA'