Package: GOSemSim

Version: 1.10.2

Command: D:\biocbld\bbs-2.8-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch GOSemSim_1.10.2.tar.gz

StartedAt: 2011-10-14 14:54:55 -0700 (Fri, 14 Oct 2011)

EndedAt: 2011-10-14 14:58:05 -0700 (Fri, 14 Oct 2011)

EllapsedTime: 189.7 seconds

RetCode: 0

Status:  OK

CheckDir: GOSemSim.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.8-bioc/meat/GOSemSim.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'GOSemSim/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'GOSemSim' version '1.10.2'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GOSemSim' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'GOSemSim' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: DBI




















** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (GOSemSim)

name	user	system	elapsed
GOSet-class	0.44	0.01	0.63
GOSet-methods	0	0	0
GeneClusterSet-class	18.83	0.14	20.73
GeneSet-class	10.28	0.08	10.39
Params-class	0	0	0
Params-methods	0.03	0.00	0.03
clusterSim	10.32	0.02	10.35
geneSim	9.60	0.01	9.62
goSim	0.18	0.00	0.17
mclusterSim	11.20	0.03	11.24
mgeneSim	9.81	0.02	9.82
mgoSim	0.22	0.00	0.22