Package: Category

Version: 2.18.0

Command: /home/biocbuild/bbs-2.8-bioc/R/bin/R CMD check --no-vignettes --timings Category_2.18.0.tar.gz

StartedAt: 2011-10-20 12:04:07 -0700 (Thu, 20 Oct 2011)

EndedAt: 2011-10-20 12:07:02 -0700 (Thu, 20 Oct 2011)

EllapsedTime: 175.2 seconds

RetCode: 0

Status:  OK

CheckDir: Category.Rcheck

Warnings: 0

* using log directory ‘/loc/home/biocbuild/bbs-2.8-bioc/meat/Category.Rcheck’
* using R version 2.13.2 (2011-09-30)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘Category/DESCRIPTION’ ... OK
* this is package ‘Category’ version ‘2.18.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘Category’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘Category’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (Category)

name	user	system	elapsed
ChrBandTree-class	30.238	0.096	30.858
ChrMapHyperGParams-class	0.004	0.000	0.002
ChrMapHyperGResult-class	0	0	0
ChrMapLinearMParams-class	0.004	0.000	0.001
ChrMapLinearMResult-class	0.000	0.000	0.001
DatPkg-class	0.064	0.008	0.073
HyperGResult-accessors	0.892	0.004	1.206
LinearMParams-class	0.004	0.000	0.001
LinearMResult-class	0.000	0.000	0.001
LinearMResultBase-class	0.000	0.000	0.001
MAPAmat	16.813	0.080	17.779
applyByCategory	0.000	0.000	0.003
cateGOryMatrix	0.304	0.028	0.551
cb_parse_band_Hs	0	0	0
cb_parse_band_Mm	0	0	0
findAMstats	0.000	0.004	0.002
getPathNames	0.160	0.000	0.171
gseattperm	4.272	0.044	4.573
makeChrBandGraph	14.757	0.064	15.327
makeEBcontr	0.496	0.008	0.502
probes2MAP	0.292	0.012	0.303
probes2Path	0.072	0.016	0.134
ttperm	0.032	0.000	0.032