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Package 65/467HostnameOS / ArchBUILDCHECKBUILD BIN
BioNet 1.10.1
Marcus Dittrich
Snapshot Date: 2011-10-20 07:20:33 -0700 (Thu, 20 Oct 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_8/madman/Rpacks/BioNet
Last Changed Rev: 55224 / Revision: 59457
Last Changed Date: 2011-05-03 11:25:43 -0700 (Tue, 03 May 2011)
lamb1 Linux (openSUSE 11.3) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: BioNet
Version: 1.10.1
Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch BioNet_1.10.1.tar.gz
StartedAt: 2011-10-20 13:49:19 -0700 (Thu, 20 Oct 2011)
EndedAt: 2011-10-20 13:53:11 -0700 (Thu, 20 Oct 2011)
EllapsedTime: 232.6 seconds
RetCode: 0
Status:  OK 
CheckDir: BioNet.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.8-bioc/meat/BioNet.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'BioNet/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'BioNet' version '1.10.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'BioNet' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under inst/doc ... NOTE
  'qpdf' made some significant size reductions:
     compacted 'Tutorial.pdf' from 931Kb to 794Kb
  consider running tools::compactPDF() on these files
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

BioNet.Rcheck/00install.out:

* installing *source* package 'BioNet' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (BioNet)

BioNet.Rcheck/BioNet-Ex.timings:

nameusersystemelapsed
aggrPvals1.0060.0721.083
bumOptim1.1440.3151.468
compareNetworks2.3560.1362.557
fbum0.0010.0000.000
fbumLL1.3650.3461.760
fdrThreshold1.4850.3541.904
fitBumModel1.8050.3672.197
getCompScores3.6130.1973.860
getEdgeList1.3870.0441.478
hist.bum1.3850.3512.077
largestComp14.790 2.45217.819
largestScoreComp16.053 2.63918.807
loadNetwork.sif000
makeNetwork0.0150.0000.015
mapByVar0.0000.0010.001
permutateNodes20.518 2.67223.373
piUpper1.3340.3831.722
plot.bum2.0530.3942.468
plot3dModule5.2920.9356.268
plotLLSurface1.0290.2051.246
plotModule4.7980.9205.809
print.bum1.3590.3431.705
pvaluesExample0.0170.0010.019
readHeinzGraph0.5810.0130.597
readHeinzTree0.5490.0090.564
rmSelfLoops0.0120.0010.013
runFastHeinz13.612 1.52415.301
save3dModule3.5750.7674.390
saveNetwork2.0470.0842.143
scanFDR1.3820.3761.777
scoreFunction1.0350.4201.469
scoreNodes4.9910.9235.972
scoreOffset1.4190.3431.769
subNetwork0.0600.0030.062
summary.bum1.4450.3671.822
writeHeinz4.0000.7564.805
writeHeinzEdges 8.974 0.98810.045
writeHeinzNodes4.5200.8015.453