Package: globaltest

Version: 5.5.1

Command: E:\biocbld\bbs-2.8-bioc\R\bin\R.exe CMD check --no-vignettes --timings globaltest_5.5.1.tar.gz

StartedAt: 2011-02-24 18:18:00 -0800 (Thu, 24 Feb 2011)

EndedAt: 2011-02-24 18:20:13 -0800 (Thu, 24 Feb 2011)

EllapsedTime: 133.2 seconds

RetCode: 0

Status:  OK

CheckDir: globaltest.Rcheck

Warnings: 0

* using log directory 'E:/biocbld/bbs-2.8-bioc/meat/globaltest.Rcheck'
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'globaltest/DESCRIPTION' ... OK
* this is package 'globaltest' version '5.5.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'globaltest' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'globaltest' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Creating a new generic function for "sort" in "globaltest"
Creating a new generic function for "model.matrix" in "globaltest"
Creating a new generic function for "coefficients" in "globaltest"
Creating a new generic function for "fitted.values" in "globaltest"
Creating a new generic function for "residuals" in "globaltest"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (globaltest)

name	user	system	elapsed
comparative	3.56	0.00	3.60
diagnostics	0.70	0.00	0.74
genesettesting	0	0	0
gt	0.58	0.00	0.58
gt.object-class	0.39	0.00	0.42
gtoptions	0	0	0
mlogit	0.02	0.00	0.01
multtest	0.48	0.00	0.49
v4_checkerboard	0.08	0.00	0.08
v4_geneplot	0.53	0.00	0.53
v4_globaltest	3.97	0.01	4.01
v4_multtest	0.49	0.02	0.50
v4_permutations	1.79	0.01	1.83
v4_regressionplot	1.14	0.00	1.17
v4_sampleplot	0.44	0.00	0.47
v4_sampling	27.50	0.00	27.56