BioC 2.8: CHECK report for cellHTS2 on lamb2

* using log directory ‘/loc/home/biocbuild/bbs-2.8-bioc/meat/cellHTS2.Rcheck’
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘cellHTS2/DESCRIPTION’ ... OK
* this is package ‘cellHTS2’ version ‘2.15.4’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘cellHTS2’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running ‘test.R’
 OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘cellHTS2’ ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: akima
Loading required package: lattice
locfit 1.5-6 	 2010-01-20 
Scalable Robust Estimators with High Breakdown Point (version 1.1-00)
Creating a new generic function for "lines" in "cellHTS2"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (cellHTS2)

name	user	system	elapsed
Bscore	2.080	0.044	2.346
ROC-class	0.292	0.008	0.310
ROC	1.456	0.008	1.614
annotate	0.936	0.012	1.004
bdgpbiomart	0.396	0.012	0.415
buildCellHTS2	0.500	0.004	0.514
cellHTS-class	0.704	0.016	0.915
configurationAsScreenPlot	0.864	0.008	0.884
configure	0.724	0.000	0.732
convertOldCellHTS	1.144	0.012	1.166
convertWellCoordinates	0	0	0
data-KcViab	0.328	0.000	0.343
data-KcViabSmall	0.008	0.000	0.008
data-dualCh	0.012	0.000	0.010
data-oldKcViabSmall	0.008	0.000	0.008
getDynamicRange	0.592	0.008	0.622
getEnVisionRawData	0.040	0.000	0.055
getMeasureRepAgreement	0.620	0.004	0.627
getTopTable	1.293	0.008	1.318
getZfactor	0.628	0.004	0.636
imageScreen	1.012	0.000	1.015
normalizePlates	1.520	0.008	1.527
oneRowPerId	0.004	0.000	0.004
plotSpatialEffects	1.232	0.004	1.234
readHTAnalystData	1.128	0.000	1.485
readPlateList	0.816	0.000	0.828
scoreReplicates	1.032	0.004	1.040
scores2calls	1.060	0.004	1.408
setSettings	0.004	0.004	0.007
spatialNormalization	1.412	0.000	1.602
summarizeChannels	1.792	0.008	1.808
summarizeReplicates	1.032	0.004	1.046
templateDescriptionFile	0.000	0.000	0.002
updateCellHTS	0.236	0.000	0.234
write.tabdel	0.020	0.000	0.022
writeReport	0.008	0.000	0.008
writeTab	0.016	0.000	0.016

Summary

Command output