Package: IPPD

Version: 0.99.1

Command: E:\biocbld\bbs-2.8-bioc\R\bin\R.exe CMD check --no-vignettes --timings IPPD_0.99.1.tar.gz

StartedAt: 2011-02-24 18:30:55 -0800 (Thu, 24 Feb 2011)

EndedAt: 2011-02-24 18:33:06 -0800 (Thu, 24 Feb 2011)

EllapsedTime: 131.9 seconds

RetCode: 0

Status:  OK

CheckDir: IPPD.Rcheck

Warnings: 0

* using log directory 'E:/biocbld/bbs-2.8-bioc/meat/IPPD.Rcheck'
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'IPPD/DESCRIPTION' ... OK
* this is package 'IPPD' version '0.99.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'IPPD' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
getpeakheights: no visible binding for global variable 'tableaveragine'
threshold,peaklist: no visible binding for global variable 'peaklist'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'IPPD' ...
** libs
gcc -I"E:/biocbld/BBS-2˜1.8-B/R/include"          -O3 -Wall  -std=gnu99 -c R_init_IPPD.c -o R_init_IPPD.o
R_init_IPPD.c:29:1: warning: missing braces around initializer
R_init_IPPD.c:29:1: warning: (near initialization for 'cmethods[10]')
gcc -shared -s -static-libgcc -o IPPD.dll tmp.def R_init_IPPD.o -LE:/biocbld/BBS-2˜1.8-B/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.8-bioc/meat/IPPD.Rcheck/IPPD/libs/i386
** R
** data
** inst
** preparing package for lazy loading
Loading required package: lattice

Attaching package: 'Matrix'

The following object(s) are masked from 'package:base':

    det

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (IPPD)

name	user	system	elapsed
fitModelParameters	10.47	0.00	10.54
getPeaklist	57.00	2.93	60.49
myo500	0.07	0.00	0.06
toyspectrum	0.36	0.03	0.39