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Package 296/419HostnameOS / ArchBUILDCHECKBUILD BIN
pcaMethods 1.32.0
Wolfram Stacklies
Snapshot Date: 2010-12-19 23:27:17 -0800 (Sun, 19 Dec 2010)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_7/madman/Rpacks/pcaMethods
Last Changed Rev: 50293 / Revision: 51615
Last Changed Date: 2010-10-17 22:34:23 -0700 (Sun, 17 Oct 2010)
lamb2 Linux (openSUSE 11.2) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: pcaMethods
Version: 1.32.0
Command: E:\biocbld\bbs-2.7-bioc\R\bin\R.exe CMD check --no-vignettes --timings pcaMethods_1.32.0.tar.gz
StartedAt: 2010-12-20 08:11:11 -0800 (Mon, 20 Dec 2010)
EndedAt: 2010-12-20 08:14:18 -0800 (Mon, 20 Dec 2010)
EllapsedTime: 186.8 seconds
RetCode: 0
Status:  OK  
CheckDir: pcaMethods.Rcheck
Warnings: 0

Command output

* using log directory 'E:/biocbld/bbs-2.7-bioc/meat/pcaMethods.Rcheck'
* using R version 2.12.1 (2010-12-16)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'pcaMethods/DESCRIPTION' ... OK
* this is package 'pcaMethods' version '1.32.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'pcaMethods' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

pcaMethods.Rcheck/00install.out:

* installing *source* package 'pcaMethods' ...
** libs
g++ -I"E:/biocbld/BBS-2˜1.7-B/R/include" -IE:/biocbld/BBS-2˜1.7-B/R/library/Rcpp/include        -O2 -Wall  -c nipals.cpp -o nipals.o
g++ -shared -s -static-libgcc -o pcaMethods.dll tmp.def nipals.o E:/biocbld/BBS-2˜1.7-B/R/library/Rcpp/lib/i386/libRcpp.a -LE:/biocbld/BBS-2˜1.7-B/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.7-bioc/meat/pcaMethods.Rcheck/pcaMethods/libs/i386
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.


Attaching package: 'pls'

The following object(s) are masked from 'package:stats':

    loadings

Creating a new generic function for "print" in "pcaMethods"
Creating a new generic function for "biplot" in "pcaMethods"
Creating a new generic function for "summary" in "pcaMethods"
Creating a new generic function for "predict" in "pcaMethods"
Creating a new generic function for "residuals" in "pcaMethods"
Creating a new generic function for "resid" in "pcaMethods"
Creating a new generic function for "fitted" in "pcaMethods"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (pcaMethods)

pcaMethods.Rcheck/pcaMethods-Ex.timings:

nameusersystemelapsed
DModX0.070.000.06
Q20.200.030.25
RnipalsPca0.580.040.61
biplot.pcaRes0.030.000.04
bpca2.700.002.73
fitted.pcaRes0.020.000.02
kEstimate35.64 0.0135.79
kEstimateFast0.400.000.41
leverage0.080.000.08
llsImpute0.390.000.40
nipalsPca0.030.000.03
nlpca3.060.003.06
nni0.350.000.35
pca0.140.000.14
plot.pcaRes0.730.020.75
plotPcs0.050.010.06
ppca0.170.000.17
predict.pcaRes0.020.020.03
prep000
residuals.pcaRes0.020.000.04
robustPca24.54 0.0524.69
robustSvd55.94 0.0456.06
slplot0.060.020.08
svdImpute0.220.000.22
svdPca0.030.010.05
wasna0.050.000.05