Package: makePlatformDesign

Version: 1.14.0

Command: /home/biocbuild/bbs-2.7-bioc/R/bin/R CMD check --no-vignettes --timings makePlatformDesign_1.14.0.tar.gz

StartedAt: 2011-04-07 07:29:35 -0700 (Thu, 07 Apr 2011)

EndedAt: 2011-04-07 07:31:07 -0700 (Thu, 07 Apr 2011)

EllapsedTime: 91.6 seconds

RetCode: 0

Status:  OK

CheckDir: makePlatformDesign.Rcheck

Warnings: 0

* using log directory ‘/loc/home/biocbuild/bbs-2.7-bioc/meat/makePlatformDesign.Rcheck’
* using R version 2.12.2 (2011-02-25)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘makePlatformDesign/DESCRIPTION’ ... OK
* this is package ‘makePlatformDesign’ version ‘1.14.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘makePlatformDesign’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
makePDpackage.old: possible error in makeSNPenv(filename, seqfile,
  annotfile, textCDF): unused argument(s) (textCDF)
makeSNPenv: missing arguments not allowed in calls to ‘list’
readndfplex: no visible binding for global variable ‘PROBE_CLASS’
writePackage: no visible binding for global variable ‘verbose’
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ... OK
* checking PDF version of manual ... OK

* installing *source* package ‘makePlatformDesign’ ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.7-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -c matchprobes.c -o matchprobes.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.7-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -c strutils.c -o strutils.o
gcc -std=gnu99 -shared -L/usr/local/lib64 -o makePlatformDesign.so matchprobes.o strutils.o -L/home/biocbuild/bbs-2.7-bioc/R/lib -lR
installing to /loc/home/biocbuild/bbs-2.7-bioc/meat/makePlatformDesign.Rcheck/makePlatformDesign/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (makePlatformDesign)

name	user	system	elapsed
makePDpackage	0.000	0.000	0.001