MANOR 1.22.0
Pierre Neuvial
| Snapshot Date: 2011-04-06 23:24:01 -0700 (Wed, 06 Apr 2011) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_7/madman/Rpacks/MANOR | | Last Changed Rev: 50293 / Revision: 54588 | | Last Changed Date: 2010-10-17 22:34:23 -0700 (Sun, 17 Oct 2010) |
| lamb2 | Linux (openSUSE 11.2) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | OK | OK | [ OK ] |
* installing *source* package 'MANOR' ...
Using auto-selected zip option '--use-zip-data'
** libs
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.7-bioc/R/include" -O2 -Wall -std=gnu99 -c Rnem_arg.c -o Rnem_arg.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.7-bioc/R/include" -O2 -Wall -std=gnu99 -c Rnem_exe.c -o Rnem_exe.o
Rnem_exe.c: In function 'MakeErrinfo':
Rnem_exe.c:216:20: warning: cast from pointer to integer of different size
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.7-bioc/R/include" -O2 -Wall -std=gnu99 -c exememo.c -o exememo.o
exememo.c: In function 'GenAlloc':
exememo.c:39:6: warning: format '%ld' expects type 'long int', but argument 5 has type 'size_t'
exememo.c:39:6: warning: format '%ld' expects type 'long int', but argument 6 has type 'size_t'
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.7-bioc/R/include" -O2 -Wall -std=gnu99 -c lib_io.c -o lib_io.o
lib_io.c: In function 'CountLinesColumns':
lib_io.c:354:13: warning: 'mincols' may be used uninitialized in this function
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.7-bioc/R/include" -O2 -Wall -std=gnu99 -c nem_alg.c -o nem_alg.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.7-bioc/R/include" -O2 -Wall -std=gnu99 -c nem_hlp.c -o nem_hlp.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.7-bioc/R/include" -O2 -Wall -std=gnu99 -c nem_mod.c -o nem_mod.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.7-bioc/R/include" -O2 -Wall -std=gnu99 -c nem_nei.c -o nem_nei.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.7-bioc/R/include" -O2 -Wall -std=gnu99 -c nem_rnd.c -o nem_rnd.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.7-bioc/R/include" -O2 -Wall -std=gnu99 -c nem_ver.c -o nem_ver.o
x86_64-w64-mingw32-gcc -shared -s -static-libgcc -o MANOR.dll tmp.def Rnem_arg.o Rnem_exe.o exememo.o lib_io.o nem_alg.o nem_hlp.o nem_mod.o nem_nei.o nem_rnd.o nem_ver.o -LD:/biocbld/bbs-2.7-bioc/R/bin/x64 -lR
installing to D:/biocbld/bbs-2.7-bioc/meat/MANOR.buildbin-libdir/MANOR/libs/x64
** R
** data
** inst
** preparing package for lazy loading
######################################################################################
Have fun with GLAD
For smoothing it is possible to use either
the AWS algorithm (Polzehl and Spokoiny, 2002)
or the HaarSeg algorithm (Ben-Yaacov and Eldar, Bioinformatics, 2008)
If you use the package with AWS, please cite:
Hupe et al. (Bioinformatics, 2004) and Polzehl and Spokoiny (2002)
If you use the package with HaarSeg, please cite:
Hupe et al. (Bioinformatics, 2004) and (Ben-Yaacov and Eldar, Bioinformatics, 2008)
For fast computation it is recommanded to use
the daglad function with smoothfunc=haarseg
######################################################################################
New options are available in daglad: see help for details.
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MANOR' as MANOR_1.22.0.zip
* DONE (MANOR)