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Package 273/419HostnameOS / ArchBUILDCHECKBUILD BIN
netresponse 1.0.2
Leo Lahti
Snapshot Date: 2011-04-06 23:24:01 -0700 (Wed, 06 Apr 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_7/madman/Rpacks/netresponse
Last Changed Rev: 51947 / Revision: 54588
Last Changed Date: 2011-01-16 13:03:56 -0800 (Sun, 16 Jan 2011)
lamb2 Linux (openSUSE 11.2) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 

Summary

Package: netresponse
Version: 1.0.2
Command: E:\biocbld\bbs-2.7-bioc\R\bin\R.exe CMD check --no-vignettes --timings netresponse_1.0.2.tar.gz
StartedAt: 2011-04-07 08:02:46 -0700 (Thu, 07 Apr 2011)
EndedAt: 2011-04-07 08:03:43 -0700 (Thu, 07 Apr 2011)
EllapsedTime: 57.5 seconds
RetCode: 0
Status:  OK  
CheckDir: netresponse.Rcheck
Warnings: 0

Command output

* using log directory 'E:/biocbld/bbs-2.7-bioc/meat/netresponse.Rcheck'
* using R version 2.12.2 (2011-02-25)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'netresponse/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'netresponse' version '1.0.2'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'netresponse' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running 'test.R'
  Running 'vdpmixture.R'
  Running 'visualization.R'
 OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

netresponse.Rcheck/00install.out:

* installing *source* package 'netresponse' ...
** libs
gcc -I"E:/biocbld/BBS-2˜1.7-B/R/include"         -O3 -Wall  -std=gnu99 -c netresponse.c -o netresponse.o
netresponse.c: In function 'mHPpost':
netresponse.c:262:15: warning: unused variable 'prior_fields'
netresponse.c: In function 'mLogLambda':
netresponse.c:653:11: warning: 'Mumu' may be used uninitialized in this function
netresponse.c:653:18: warning: 'S2mu' may be used uninitialized in this function
netresponse.c:653:25: warning: 'Mubar' may be used uninitialized in this function
netresponse.c:653:33: warning: 'Mutilde' may be used uninitialized in this function
netresponse.c:654:6: warning: 'AlphaKsi' may be used uninitialized in this function
netresponse.c:654:17: warning: 'BetaKsi' may be used uninitialized in this function
netresponse.c:654:27: warning: 'KsiAlpha' may be used uninitialized in this function
netresponse.c:654:38: warning: 'KsiBeta' may be used uninitialized in this function
netresponse.c:654:48: warning: 'U_p' may be used uninitialized in this function
gcc -shared -s -static-libgcc -o netresponse.dll tmp.def netresponse.o -LE:/biocbld/BBS-2˜1.7-B/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.7-bioc/meat/netresponse.Rcheck/netresponse/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

netresponse Copyright (C) 2008-2010 Leo Lahti.
This program comes with ABSOLUTELY NO WARRANTY.
This is free software, and you are welcome to redistribute it under GNU GPL >=2, see the licensing terms for details.

* DONE (netresponse)

netresponse.Rcheck/netresponse-Ex.timings:

nameusersystemelapsed
NetResponseModel-class0.000.010.02
detect.responses7.510.007.53
get.model.parameters0.080.000.08
get.subnets000
netresponse-package6.740.006.76
response2sample0.080.000.08
result.stats0.230.000.25
sample2response7.440.007.44
toydata0.010.000.01
vdp.mixt0.240.000.24