Package: maSigPro

Version: 1.22.0

Command: D:\biocbld\bbs-2.7-bioc\R\bin\R.exe CMD check --no-vignettes --timings maSigPro_1.22.0.tar.gz

StartedAt: 2011-04-07 11:34:25 -0700 (Thu, 07 Apr 2011)

EndedAt: 2011-04-07 11:36:28 -0700 (Thu, 07 Apr 2011)

EllapsedTime: 123.4 seconds

RetCode: 0

Status:  OK

CheckDir: maSigPro.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.7-bioc/meat/maSigPro.Rcheck'
* using R version 2.12.2 (2011-02-25)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'maSigPro/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'maSigPro' version '1.22.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'maSigPro' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'maSigPro' ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading Tcl/Tk interface ... done
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (maSigPro)

name	user	system	elapsed
PlotGroups	0.06	0.01	0.07
PlotProfiles	0.02	0.00	0.02
T.fit	10.50	0.02	10.53
average.rows	0	0	0
data.abiotic	0.03	0.00	0.03
edesign.OD	0	0	0
edesign.abiotic	0	0	0
edesignCT	0.01	0.00	0.02
edesignDR	0	0	0
get.siggenes	4.55	0.03	4.58
i.rank	0	0	0
maSigPro	6.98	0.02	7.00
make.design.matrix	0.00	0.01	0.01
p.vector	2.43	0.00	2.42
position	0	0	0
reg.coeffs	0	0	0
see.genes	1.76	0.17	2.08
stepback	0.05	0.00	0.05
stepfor	0.23	0.00	0.23
suma2Venn	0.00	0.00	0.02
two.ways.stepback	0.18	0.00	0.17
two.ways.stepfor	0.2	0.0	0.2