Package: flowMerge

Version: 1.4.0

Command: /Library/Frameworks/R.framework/Versions/2.12/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch flowMerge_1.4.0.tar.gz

StartedAt: 2011-03-31 05:39:25 -0700 (Thu, 31 Mar 2011)

EndedAt: 2011-03-31 05:41:53 -0700 (Thu, 31 Mar 2011)

EllapsedTime: 148.3 seconds

RetCode: 0

Status:  OK

CheckDir: flowMerge.Rcheck

Warnings: 0

* using log directory ‘/Users/biocbuild/bbs-2.7-bioc/meat/flowMerge.Rcheck’
* using R version 2.12.2 Patched (2011-02-25 r54591)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘flowMerge/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘flowMerge’ version ‘1.4.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘flowMerge’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘flowMerge’ ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: mnormt
Loading required package: ellipse
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: flowCore
Loading required package: rrcov
Loading required package: robustbase
Loading required package: pcaPP
Loading required package: mvtnorm
Scalable Robust Estimators with High Breakdown Point (version 1.1-00)

Attaching package: 'flowCore'

The following object(s) are masked from 'package:stats':

    alias, filter


Attaching package: 'flowClust'

The following object(s) are masked from 'package:mvtnorm':

    dmvt

The following object(s) are masked from 'package:graphics':

    box


Attaching package: 'snow'

The following object(s) are masked from 'package:base':

    enquote

Creating a new generic function for "merge" in "flowMerge"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (flowMerge)

name	user	system	elapsed
NENT	1.190	0.077	1.286
fitPiecewiseLinreg	0.976	0.059	1.049
flowClust.res	0.123	0.006	0.129
flowMerge-package	1.096	0.053	1.161
flowObj	0.958	0.052	1.017
map	0.006	0.001	0.008
merge-methods	0.964	0.057	1.052
merge	0.941	0.051	1.009
pFlowMerge	32.141	1.306	33.894
plot-methods	1.038	0.069	1.199
updateU	1.033	0.069	1.137