Package: GenomeGraphs

Version: 1.10.0

Command: /Library/Frameworks/R.framework/Versions/2.12/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch GenomeGraphs_1.10.0.tar.gz

StartedAt: 2011-03-29 05:51:30 -0700 (Tue, 29 Mar 2011)

EndedAt: 2011-03-29 05:53:44 -0700 (Tue, 29 Mar 2011)

EllapsedTime: 134.3 seconds

RetCode: 0

Status:  OK

CheckDir: GenomeGraphs.Rcheck

Warnings: 0

* using log directory ‘/Users/biocbuild/bbs-2.7-bioc/meat/GenomeGraphs.Rcheck’
* using R version 2.12.2 Patched (2011-02-25 r54591)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘GenomeGraphs/DESCRIPTION’ ... OK
* this is package ‘GenomeGraphs’ version ‘1.10.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘GenomeGraphs’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘GenomeGraphs’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (GenomeGraphs)

name	user	system	elapsed
AnnotationTrack-class	0.002	0.000	0.002
BaseTrack-class	0.001	0.000	0.001
DisplayPars-class	0.006	0.000	0.006
DisplayPars	0.464	0.018	3.535
ExonArray-class	0.023	0.001	0.024
Gene-class	0.001	0.000	0.001
GeneModel-class	0.189	0.005	0.195
GeneRegion-class	0.001	0.000	0.002
GenericArray-class	0.002	0.001	0.002
GenomeAxis-class	0.001	0.000	0.002
HighlightRegion-class	0.004	0.000	0.005
Ideogram-class	0.003	0.000	0.002
ImplementsTrackOverlay-class	0.001	0.000	0.001
Legend-class	0.001	0.000	0.001
MappedRead-class	0.000	0.000	0.001
Overlay-class	0.001	0.001	0.001
RectangleOverlay-class	0.002	0.000	0.002
Segmentation-class	0.001	0.000	0.002
Smoothing-class	0.001	0.000	0.002
TextOverlay-class	0.001	0.000	0.002
Title-class	0.001	0.000	0.001
TrackOverlay-class	0.002	0.000	0.002
Transcript-class	0.001	0.000	0.002
TranscriptRegion-class	0.001	0.000	0.002
cn	0.000	0.000	0.001
exonProbePos	0	0	0
gdObject-class	0.002	0.001	0.002
gdPlot	2.535	0.038	70.648
getPar	0.002	0.000	0.002
ideogramTab	0.003	0.001	0.004
intensity	0.001	0.001	0.001
makeAnnotationTrack	0.039	0.000	0.040
makeBaseTrack	0.007	0.001	0.006
makeExonArray	0.008	0.001	0.009
makeGene	0.003	0.000	0.003
makeGeneModel	0.002	0.001	0.002
makeGeneRegion	0.005	0.000	0.005
makeGenericArray	0.002	0.000	0.002
makeGenomeAxis	0.002	0.000	0.002
makeIdeogram	0.004	0.000	0.004
makeLegend	0.002	0.001	0.002
makeRectangleOverlay	0.134	0.004	0.142
makeSegmentation	0.111	0.003	0.115
makeSmoothing	0.158	0.006	0.168
makeTextOverlay	0.118	0.003	0.122
makeTitle	0.003	0.001	0.004
makeTranscript	0.003	0.000	0.004
probestart	0	0	0
segEnd	0.000	0.000	0.001
segStart	0.001	0.000	0.000
segments	0.000	0.001	0.001
seqDataEx	0.043	0.002	0.046
setPar	0.018	0.001	0.018
showDisplayOptions	0.002	0.000	0.002
unrData	0	0	0
unrNProbes	0.001	0.000	0.001
unrPositions	0	0	0
yeastCons1	0.001	0.001	0.000