RdbiPgSQL 1.24.0
Jianhua Zhang
| Snapshot Date: 2011-03-30 23:22:56 -0700 (Wed, 30 Mar 2011) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_7/madman/Rpacks/RdbiPgSQL | | Last Changed Rev: 50293 / Revision: 54281 | | Last Changed Date: 2010-10-17 22:34:23 -0700 (Sun, 17 Oct 2010) |
| lamb2 | Linux (openSUSE 11.2) / x86_64 | OK | [ OK ] | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | N O T S U P P O R T E D |
| gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | N O T S U P P O R T E D |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* using log directory ‘/loc/home/biocbuild/bbs-2.7-bioc/meat/RdbiPgSQL.Rcheck’
* using R version 2.12.2 (2011-02-25)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RdbiPgSQL/DESCRIPTION’ ... OK
* this is package ‘RdbiPgSQL’ version ‘1.24.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘RdbiPgSQL’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: dbAppendTable.Rd:7-8: Dropping empty section \usage
prepare_Rd: dbAppendTable.Rd:9-10: Dropping empty section \arguments
prepare_Rd: internal.Rd:23-24: Dropping empty section \usage
prepare_Rd: internal.Rd:25-26: Dropping empty section \arguments
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... NOTE
S3 methods shown with full name in documentation object 'dbColumnInfo.PgSQL.result':
dbColumnInfo.PgSQL.result
S3 methods shown with full name in documentation object 'dbReadTable.PgSQL.conn':
dbReadTable.PgSQL.conn
The \usage entries for S3 methods should use the \method markup and not
their full name.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ... NONE
* checking PDF version of manual ... OK
* installing *source* package ‘RdbiPgSQL’ ...
creating cache ./config.cache
checking for PQconnectdb in -lpq... yes
checking how to run the C preprocessor... cc -E
checking for /usr/include/libpq-fe.h... no
checking how to run the C preprocessor... cc -E
checking for /usr/include/pgsql/libpq-fe.h... yes
updating cache ./config.cache
creating ./config.status
creating src/Makevars
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.7-bioc/R/include -I/usr/include/pgsql -I/usr/local/include -fpic -g -O2 -c PgSQL.c -o PgSQL.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.7-bioc/R/include -I/usr/include/pgsql -I/usr/local/include -fpic -g -O2 -c PgSQLInit.c -o PgSQLInit.o
gcc -std=gnu99 -shared -L/usr/local/lib64 -o RdbiPgSQL.so PgSQL.o PgSQLInit.o -lpq -L/home/biocbuild/bbs-2.7-bioc/R/lib -lR
installing to /loc/home/biocbuild/bbs-2.7-bioc/meat/RdbiPgSQL.Rcheck/RdbiPgSQL/libs
** R
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
* DONE (RdbiPgSQL)