GeneticsBase 1.15.0
The R Genetics Project
| Snapshot Date: 2010-10-14 23:20:14 -0700 (Thu, 14 Oct 2010) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/GeneticsBase | | Last Changed Rev: 48595 / Revision: 50215 | | Last Changed Date: 2010-07-30 10:44:04 -0700 (Fri, 30 Jul 2010) |
| lamb2 | Linux (openSUSE 11.2) / x86_64 | [ ERROR ] | skipped | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | ERROR | skipped | skipped |
| gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | ERROR | skipped | skipped |
| pelham | Mac OS X Leopard (10.5.8) / i386 | ERROR | skipped | skipped |
* checking for file ‘GeneticsBase/DESCRIPTION’ ... OK
* preparing ‘GeneticsBase’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
-----------------------------------
* installing *source* package ‘GeneticsBase’ ...
** libs
g++ -I/home/biocbuild/bbs-2.7-bioc/R/include -I/usr/local/include -fpic -g -O2 -c LdMax.cpp -o LdMax.o
g++ -I/home/biocbuild/bbs-2.7-bioc/R/include -I/usr/local/include -fpic -g -O2 -c R_bitArrayVector.cpp -o R_bitArrayVector.o
g++ -I/home/biocbuild/bbs-2.7-bioc/R/include -I/usr/local/include -fpic -g -O2 -c bAV.cpp -o bAV.o
g++ -I/home/biocbuild/bbs-2.7-bioc/R/include -I/usr/local/include -fpic -g -O2 -c bitArrayVector.cpp -o bitArrayVector.o
g++ -I/home/biocbuild/bbs-2.7-bioc/R/include -I/usr/local/include -fpic -g -O2 -c convert.cpp -o convert.o
convert.cpp:1:2: warning: #import is a deprecated GCC extension
g++ -I/home/biocbuild/bbs-2.7-bioc/R/include -I/usr/local/include -fpic -g -O2 -c getLDdist.cpp -o getLDdist.o
g++ -I/home/biocbuild/bbs-2.7-bioc/R/include -I/usr/local/include -fpic -g -O2 -c readGenes.ped.cpp -o readGenes.ped.o
g++ -I/home/biocbuild/bbs-2.7-bioc/R/include -I/usr/local/include -fpic -g -O2 -c register.cpp -o register.o
g++ -shared -L/usr/local/lib64 -o GeneticsBase.so LdMax.o R_bitArrayVector.o bAV.o bitArrayVector.o convert.o getLDdist.o readGenes.ped.o register.o -L/home/biocbuild/bbs-2.7-bioc/R/lib -lR
bitArrayVector.o: In function `main':
/loc/home/biocbuild/bbs-2.7-bioc/meat/GeneticsBase/src/bitArrayVector.cpp:814: multiple definition of `main'
bAV.o:/loc/home/biocbuild/bbs-2.7-bioc/meat/GeneticsBase/src/bAV.cpp:814: first defined here
collect2: ld returned 1 exit status
make: *** [GeneticsBase.so] Error 1
ERROR: compilation failed for package ‘GeneticsBase’
* removing ‘/tmp/Rtmp81gaDI/Rinst4845a3ed/GeneticsBase’
-----------------------------------
ERROR: Installation failed
Removing installation dir