Package: AgiMicroRna

Version: 1.4.0

Command: D:\biocbld\bbs-2.7-bioc\R\bin\R.exe CMD check --no-vignettes --timings AgiMicroRna_1.4.0.tar.gz

StartedAt: 2011-03-31 06:08:44 -0700 (Thu, 31 Mar 2011)

EndedAt: 2011-03-31 06:12:16 -0700 (Thu, 31 Mar 2011)

EllapsedTime: 212.3 seconds

RetCode: 0

Status:  OK

CheckDir: AgiMicroRna.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.7-bioc/meat/AgiMicroRna.Rcheck'
* using R version 2.12.2 (2011-02-25)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'AgiMicroRna/DESCRIPTION' ... OK
* this is package 'AgiMicroRna' version '1.4.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'AgiMicroRna' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File type 'perl' not found or no open command associated with it.
File type 'perl' not found or no open command associated with it.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'AgiMicroRna' ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (AgiMicroRna)

name	user	system	elapsed
HeatMapMicroRna	0.81	0.04	1.28
PCAplotMicroRna	7.55	0.14	7.70
RleMicroRna	3.11	0.01	3.12
basicLimma	0	0	0
boxplotMicroRna	0.86	0.00	0.86
cvArray	0	0	0
filterMicroRna	3.54	0.13	3.67
getDecideTests	0	0	0
hierclusMicroRna	0	0	0
mvaBASIC	2.03	0.00	2.03
mvaMicroRna	17.43	0.04	17.49
plotDensityMicroRna	0.27	0.00	0.26
pvalHistogram	0	0	0
qcPlots	0	0	0
readMicroRnaAFE	0	0	0
rmaMicroRna	81.65	0.05	81.72
significantMicroRna	0.79	0.06	0.85
tgsMicroRna	0.56	0.03	0.60
tgsNormalization	0	0	0
writeEset	0	0	0