pdInfoBuilder 1.11.2
Benilton Carvalho
| Bioconductor Changelog | | Snapshot Date: 2009-12-07 11:32:00 -0800 (Mon, 07 Dec 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/pdInfoBuilder | | Last Changed Rev: 42906 / Revision: 43434 | | Last Changed Date: 2009-11-10 15:58:46 -0800 (Tue, 10 Nov 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.6-bioc/meat/pdInfoBuilder.Rcheck'
* using R version 2.11.0 Under development (unstable) (2009-10-22 r50179)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'pdInfoBuilder/DESCRIPTION' ... OK
* this is package 'pdInfoBuilder' version '1.11.2'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'pdInfoBuilder' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
combinePgfClfProbesetsMps: no visible binding for global variable
'pstype'
combinePgfClfProbesetsMps: no visible binding for global variable
'ptype'
parseCdfCelProbe: no visible binding for global variable 'fsetid'
parseCdfCelProbe: no visible binding for global variable 'isPm'
parseNgsTrio: no visible binding for global variable 'mismatch'
makePdInfoPackage,AffySTPDInfoPkgSeed: no visible binding for global
variable 'exonTranscriptionMmFeatureSchema'
makePdInfoPackage,NgsExpressionPDInfoPkgSeed: no visible binding for
global variable 'ngsExprMmFeatureSchema'
makePdInfoPackage,NgsTilingPDInfoPkgSeed: no visible binding for global
variable 'tiledRegionMmFeatureSchema'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK
* install options are ' --no-html'
* installing *source* package 'pdInfoBuilder' ...
** libs
making DLL ...
gcc -I"e:/biocbld/bbs-2.6-bioc/R/include" -O3 -Wall -std=gnu99 -c pdInfoBuilder.c -o pdInfoBuilder.o
gcc -shared -s -o pdInfoBuilder.dll tmp.def pdInfoBuilder.o -Le:/biocbld/bbs-2.6-bioc/R/bin -lR
... done
** R
** inst
** preparing package for lazy loading
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: DBI
Loading required package: oligoClasses
Welcome to oligoClasses version 1.9.14
Loading required package: preprocessCore
Welcome to oligo version 1.11.9
** help
*** installing help indices
** building package indices ...
** MD5 sums
* DONE (pdInfoBuilder)