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Package 238/354HostnameOS / ArchBUILDCHECKBUILD BIN
ontoTools 1.25.0
Vince Carey
Bioconductor Changelog
Snapshot Date: 2009-12-07 11:32:00 -0800 (Mon, 07 Dec 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ontoTools
Last Changed Rev: 42686 / Revision: 43434
Last Changed Date: 2009-10-27 16:45:24 -0700 (Tue, 27 Oct 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  ERROR  skipped 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386 [ ERROR ] skipped  skipped 
pelham Mac OS X Leopard (10.5.8) / i386  ERROR  skipped  skipped 
Package: ontoTools
Version: 1.25.0
Command: /Library/Frameworks/R.framework/Versions/2.11/Resources/bin/R CMD build ontoTools
StartedAt: 2009-12-07 13:22:44 -0800 (Mon, 07 Dec 2009)
EndedAt: 2009-12-07 13:22:53 -0800 (Mon, 07 Dec 2009)
EllapsedTime: 8.8 seconds
RetCode: 1
Status: ERROR
PackageFile: None
PackageFileSize: NA

Command output

* checking for file 'ontoTools/DESCRIPTION' ... OK
* preparing 'ontoTools':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* installing *source* package ‘ontoTools’ ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Package SparseM (0.83) loaded.  
	   To cite, see citation("SparseM")


Attaching package: 'SparseM'


	The following object(s) are masked from package:stats :

	 model.response 


	The following object(s) are masked from package:base :

	 backsolve,
	 chol 

Loading required package: DBI
Creating a generic for "colSums" in package "ontoTools"
    (the supplied definition differs from and overrides the implicit generic
    in package "base": Formal arguments differ: (x, na.rm, dims), (x, na.rm, dims, ...))
Creating a generic for "rowSums" in package "ontoTools"
    (the supplied definition differs from and overrides the implicit generic
    in package "base": Formal arguments differ: (x, na.rm, dims), (x, na.rm, dims, ...))
Creating a new generic function for "grep" in "ontoTools"
In method for function "grep": expanding the signature to include
omitted arguments in definition: invert = "missing"
Error in rematchDefinition(definition, fdef, mnames, fnames, signature) : 
  methods can add arguments to the generic only if '...' is an argument to the generic
Error : unable to load R code in package 'ontoTools'
ERROR: lazy loading failed for package ‘ontoTools’
* removing ‘/private/tmp/Rinst1618328933/ontoTools’
 ERROR
Installation failed.
Removing '/tmp/Rinst1618328933'