Rdisop 1.7.0
Steffen Neumann
| Bioconductor Changelog | | Snapshot Date: 2009-12-07 11:32:00 -0800 (Mon, 07 Dec 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rdisop | | Last Changed Rev: 42686 / Revision: 43434 | | Last Changed Date: 2009-10-27 16:45:24 -0700 (Tue, 27 Oct 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | [ OK ] | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | N O T S U P P O R T E D |
| pelham | Mac OS X Leopard (10.5.8) / i386 | N O T S U P P O R T E D |
* checking for file 'Rdisop/DESCRIPTION' ... OK
* preparing 'Rdisop':
* checking DESCRIPTION meta-information ... OK
* cleaning src
make: Nothing to be done for `clean'.
* installing the package to re-build vignettes
* installing *source* package 'Rdisop' ...
Building libRcpp.a in RcppSrc...
g++ -c Rcpp.cpp -o Rcpp.o -I"e:\biocbld\bbs-2.6-bioc\R/include" -I"e:\biocbld\bbs-2.6-bioc\R/src/include" -Wall -O2
ar r libRcpp.a Rcpp.o
c:\Rtools\MinGW\bin\ar.exe: creating libRcpp.a
ranlib libRcpp.a
rm Rcpp.o
Building imslib.dll in src/imslib...
cp src/winlibs/libims*.dll R_PACKAGE_DIR:E:/biocbld/bbs-2.6-bioc/tmpdir/Rinst663295050/Rdisop/libs/
-rw-r--r-- 1 biocbuild None 2806048 Oct 23 12:38 src/winlibs/libims-0.dll
-rwxr-xr-x 1 biocbuild None 2806048 Oct 23 12:38 src/winlibs/libims.dll
libs in instal directory...
total 5488
-rw-r--r-- 1 biocbuild None 2806048 Dec 7 14:23 libims-0.dll
-rwxr-xr-x 1 biocbuild None 2806048 Dec 7 14:23 libims.dll
** libs
making DLL ...
g++ -I"e:/biocbld/bbs-2.6-bioc/R/include" -I./imslib/src -I../RcppSrc/ -O2 -Wall -c disop.cpp -o disop.o
disop.cpp: In function 'bool isValidMyNitrogenRule(const ims::ComposedElement&, int)':
disop.cpp:122: warning: unused variable 'parityeven'
disop.cpp: In function 'SEXPREC* decomposeIsotopes(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
disop.cpp:207: warning: comparison between signed and unsigned integer expressions
disop.cpp:210: warning: comparison between signed and unsigned integer expressions
disop.cpp:218: warning: comparison between signed and unsigned integer expressions
disop.cpp:218: warning: comparison between signed and unsigned integer expressions
disop.cpp:171: warning: unused variable 'number_molecules_shown'
disop.cpp: In function 'SEXPREC* calculateScore(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
disop.cpp:353: warning: comparison between signed and unsigned integer expressions
disop.cpp:353: warning: comparison between signed and unsigned integer expressions
disop.cpp:370: warning: comparison between signed and unsigned integer expressions
disop.cpp:373: warning: comparison between signed and unsigned integer expressions
disop.cpp:377: warning: comparison between signed and unsigned integer expressions
disop.cpp:377: warning: comparison between signed and unsigned integer expressions
disop.cpp: In function 'void initializeAlphabet(SEXPREC*, alphabet_t&)':
disop.cpp:789: warning: deprecated conversion from string constant to 'char*'
disop.cpp:791: warning: deprecated conversion from string constant to 'char*'
disop.cpp:793: warning: deprecated conversion from string constant to 'char*'
disop.cpp:795: warning: deprecated conversion from string constant to 'char*'
disop.cpp:796: warning: deprecated conversion from string constant to 'char*'
disop.cpp:797: warning: deprecated conversion from string constant to 'char*'
g++ -shared -s -o Rdisop.dll tmp.def disop.o -L./winlibs -lims -L../RcppSrc/ -lRcpp -Le:/biocbld/bbs-2.6-bioc/R/bin -lR
Info: resolving ims::IsotopeDistribution::SIZE by linking to __imp___ZN3ims19IsotopeDistribution4SIZEE (auto-import)
Info: resolving ims::IsotopeDistribution::ABUNDANCES_SUM_ERROR by linking to __imp___ZN3ims19IsotopeDistribution20ABUNDANCES_SUM_ERRORE (auto-import)
Info: resolving vtable for ims::Alphabetby linking to __imp___ZTVN3ims8AlphabetE (auto-importc:/rtools/mingw/bin/../lib/gcc/mingw32/4.2.1-sjlj/../../../../mingw32/bin/ld.exe: warning: auto-importing has been activated without --enable-auto-import specified on the command line.
This should work unless it involves constant data structures referencing symbols from auto-imported DLLs.)
... done
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** MD5 sums
* DONE (Rdisop)
* creating vignettes ... OK
* cleaning src
make: Nothing to be done for `clean'.
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'Rdisop_1.7.0.tar.gz'