GraphAlignment 1.9.0
Joern P. Meier
| Bioconductor Changelog | | Snapshot Date: 2009-12-07 11:32:00 -0800 (Mon, 07 Dec 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/GraphAlignment | | Last Changed Rev: 42686 / Revision: 43434 | | Last Changed Date: 2009-10-27 16:45:24 -0700 (Tue, 27 Oct 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.6-bioc/meat/GraphAlignment.Rcheck'
* using R version 2.11.0 Under development (unstable) (2009-10-22 r50179)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'GraphAlignment/DESCRIPTION' ... OK
* this is package 'GraphAlignment' version '1.9.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GraphAlignment' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK
* install options are ' --no-html'
* installing *source* package 'GraphAlignment' ...
** libs
making DLL ...
gcc -I"e:/biocbld/bbs-2.6-bioc/R/include" -O3 -Wall -std=gnu99 -c GA_alloc.c -o GA_alloc.o
gcc -I"e:/biocbld/bbs-2.6-bioc/R/include" -O3 -Wall -std=gnu99 -c GA_matrix.c -o GA_matrix.o
gcc -I"e:/biocbld/bbs-2.6-bioc/R/include" -O3 -Wall -std=gnu99 -c GA_matrix_R.c -o GA_matrix_R.o
gcc -I"e:/biocbld/bbs-2.6-bioc/R/include" -O3 -Wall -std=gnu99 -c GA_message.c -o GA_message.o
gcc -I"e:/biocbld/bbs-2.6-bioc/R/include" -O3 -Wall -std=gnu99 -c GA_vector.c -o GA_vector.o
gcc -I"e:/biocbld/bbs-2.6-bioc/R/include" -O3 -Wall -std=gnu99 -c GA_vector_R.c -o GA_vector_R.o
GA_vector_R.c: In function 'GA_clamp_mode_from_R':
GA_vector_R.c:139: warning: unused variable 'size'
gcc -I"e:/biocbld/bbs-2.6-bioc/R/include" -O3 -Wall -std=gnu99 -c GraphAlignment.c -o GraphAlignment.o
GraphAlignment.c: In function 'GA_encode_directed_graph':
GraphAlignment.c:138: warning: suggest explicit braces to avoid ambiguous 'else'
GraphAlignment.c:159: warning: suggest explicit braces to avoid ambiguous 'else'
GraphAlignment.c: In function 'GA_directed_mode_from_R':
GraphAlignment.c:264: warning: unused variable 'size'
gcc -I"e:/biocbld/bbs-2.6-bioc/R/include" -O3 -Wall -std=gnu99 -c lap.c -o lap.o
lap.c: In function 'LAP_lap':
lap.c:65: warning: 'min' may be used uninitialized in this function
lap.c:64: warning: 'last' may be used uninitialized in this function
gcc -shared -s -o GraphAlignment.dll tmp.def GA_alloc.o GA_matrix.o GA_matrix_R.o GA_message.o GA_vector.o GA_vector_R.o GraphAlignment.o lap.o -Le:/biocbld/bbs-2.6-bioc/R/bin -lR
... done
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** MD5 sums
* DONE (GraphAlignment)