Package: quantsmooth

Version: 1.12.0

Command: /home/biocbuild/bbs-2.5-bioc/R/bin/R CMD check --no-vignettes quantsmooth_1.12.0.tar.gz

StartedAt: 2009-12-14 06:05:09 -0800 (Mon, 14 Dec 2009)

EndedAt: 2009-12-14 06:05:28 -0800 (Mon, 14 Dec 2009)

EllapsedTime: 19.5 seconds

RetCode: 0

Status: OK

CheckDir: quantsmooth.Rcheck

Warnings: 0

* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.5-bioc/meat/quantsmooth.Rcheck'
* using R version 2.10.0 (2009-10-26)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'quantsmooth/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'quantsmooth' version '1.12.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'quantsmooth' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
grid.chromosome: no visible binding for global variable ‘chrom.bands’
lengthChromosome: no visible binding for global variable ‘chrom.bands’
paintCytobands: no visible binding for global variable ‘chrom.bands’
position2Cytoband: no visible binding for global variable ‘chrom.bands’
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

* install options are ' --no-html'

* installing *source* package ‘quantsmooth’ ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: SparseM
Package SparseM (0.83) loaded.  
	   To cite, see citation("SparseM")


Attaching package: 'SparseM'


	The following object(s) are masked from package:stats :

	 model.response 


	The following object(s) are masked from package:base :

	 backsolve,
	 chol 


Attaching package: 'quantreg'


	The following object(s) are masked from package:utils :

	 vignette 

Loading required package: grid
** help
*** installing help indices
** building package indices ...
* DONE (quantsmooth)