flowUtils 1.6.0
Nishant Gopalakrishnan
| Snapshot Date: 2009-12-13 23:30:35 -0800 (Sun, 13 Dec 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_5/madman/Rpacks/flowUtils | | Last Changed Rev: 42684 / Revision: 43539 | | Last Changed Date: 2009-10-27 16:33:29 -0700 (Tue, 27 Oct 2009) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.5-bioc/meat/flowUtils.Rcheck'
* using R version 2.10.0 (2009-10-26)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'flowUtils/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'flowUtils' version '1.6.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'flowUtils' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
translateGate: no visible global function definition for
'xmlPolygonGateNode'
translateGate: no visible global function definition for
'xmlRectangleGateNode'
xmlCompensationEditorWin: no visible global function definition for
'xmlWindowPosition'
xmlEllipsoidGateNode: no visible binding for global variable
'xmlDimensionNode'
xmlEllipsoidGateNode: no visible global function definition for
'xmlFociNode'
xmlEllipsoidGateNode: no visible binding for global variable
'xmlVertexNode'
xmlEllipsoidGateNode: no visible global function definition for
'xmlEdgeNode'
xmlGraphWin: no visible binding for global variable 'xmlTextTraits'
xmlGraphWin: no visible global function definition for
'xmlWindowPosition'
xmlGroupsWin: no visible global function definition for 'xmlGraph'
xmlLayoutEditorWin: no visible global function definition for
'xmlWindowPosition'
xmlPolygonGateWin: no visible binding for global variable
'xmlDimensionNode'
xmlPolygonGateWin: no visible binding for global variable
'xmlVertexNode'
xmlRectangleGateWin : <anonymous>: no visible global function
definition for 'xmlDimensionNode'
xmlSampleNodeWin: no visible global function definition for
'xmlSubpopulations'
xmlSampleNodeWin: no visible global function definition for 'xmlGraph'
xmlSubpopulationsHelper: no visible global function definition for
'xmlGraph'
xmlSubpopulationsHelper: no visible global function definition for
'xmlGateNode'
xmlTableEditorWin: no visible global function definition for
'xmlWindowPosition'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* install options are ' --no-html'
* installing *source* package 'flowUtils' ...
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: rrcov
Loading required package: robustbase
Loading required package: pcaPP
Loading required package: mvtnorm
pcaPP 0.1-1 loaded
Scalable Robust Estimators with High Breakdown Point (version 1.0-00)
Attaching package: 'flowCore'
The following object(s) are masked from package:stats :
alias,
filter
Warning in namespaceImportFrom(self, asNamespace(ns)) :
replacing previous import: nodes
Warning in namespaceImportFrom(self, asNamespace(ns)) :
replacing previous import: addNode
** help
*** installing help indices
** building package indices ...
** MD5 sums
* DONE (flowUtils)