affy 1.24.2
Rafael A. Irizarry
| Snapshot Date: 2009-12-13 23:30:35 -0800 (Sun, 13 Dec 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_5/madman/Rpacks/affy | | Last Changed Rev: 42877 / Revision: 43539 | | Last Changed Date: 2009-11-09 13:09:08 -0800 (Mon, 09 Nov 2009) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | [ OK ] |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
INSTALLATION WITH 'R CMD INSTALL --preclean --library=affy.buildbin-libdir affy_1.24.2.tar.gz'
* installing *source* package ‘affy’ ...
creating cache ./config.cache
checking how to run the C preprocessor... cc -E
checking for main in -lz... yes
checking for zlib.h... yes
checking if zlib version >= 1.1.3... yes
updating cache ./config.cache
creating ./config.status
creating src/Makevars
** libs
** arch - i386
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DHAVE_ZLIB=1 -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/preprocessCore/include" -fPIC -g -O2 -c chipbackground.c -o chipbackground.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DHAVE_ZLIB=1 -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/preprocessCore/include" -fPIC -g -O2 -c getall_locations.c -o getall_locations.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DHAVE_ZLIB=1 -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/preprocessCore/include" -fPIC -g -O2 -c mas5calls.c -o mas5calls.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DHAVE_ZLIB=1 -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/preprocessCore/include" -fPIC -g -O2 -c rma2.c -o rma2.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DHAVE_ZLIB=1 -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/preprocessCore/include" -fPIC -g -O2 -c rma_common.c -o rma_common.o
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -mmacosx-version-min=10.4 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o affy.so chipbackground.o getall_locations.o mas5calls.o rma2.o rma_common.o -lz -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** R
** data
** demo
** inst
** preparing package for lazy loading
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Creating a new generic function for "open" in "affy"
Creating a new generic function for "close" in "affy"
Creating a new generic function for "colnames" in "affy"
Creating a new generic function for "barplot" in "affy"
** help
*** installing help indices
** building package indices ...
* DONE (affy)
INSTALLATION OF ppc LIBS WITH 'R_ARCH=/ppc R CMD INSTALL --preclean --library=affy.buildbin-libdir --libs-only affy_1.24.2.tar.gz'
* installing *source* package ‘affy’ ...
creating cache ./config.cache
checking how to run the C preprocessor... cc -E
checking for main in -lz... yes
checking for zlib.h... yes
checking if zlib version >= 1.1.3... yes
updating cache ./config.cache
creating ./config.status
creating src/Makevars
** libs
** arch - ppc
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -DHAVE_ZLIB=1 -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/preprocessCore/include" -fPIC -g -O2 -c chipbackground.c -o chipbackground.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -DHAVE_ZLIB=1 -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/preprocessCore/include" -fPIC -g -O2 -c getall_locations.c -o getall_locations.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -DHAVE_ZLIB=1 -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/preprocessCore/include" -fPIC -g -O2 -c mas5calls.c -o mas5calls.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -DHAVE_ZLIB=1 -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/preprocessCore/include" -fPIC -g -O2 -c rma2.c -o rma2.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -DHAVE_ZLIB=1 -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/preprocessCore/include" -fPIC -g -O2 -c rma_common.c -o rma_common.o
gcc -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -mmacosx-version-min=10.4 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o affy.so chipbackground.o getall_locations.o mas5calls.o rma2.o rma_common.o -lz -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
* DONE (affy)