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Package 285/353HostnameOS / ArchBUILDCHECKBUILD BIN
RLMM 1.8.0
Nusrat Rabbee
Snapshot Date: 2009-12-13 23:30:35 -0800 (Sun, 13 Dec 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_5/madman/Rpacks/RLMM
Last Changed Rev: 42684 / Revision: 43539
Last Changed Date: 2009-10-27 16:33:29 -0700 (Tue, 27 Oct 2009)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 
Package: RLMM
Version: 1.8.0
Command: /Library/Frameworks/R.framework/Versions/2.10/Resources/bin/R CMD check --no-vignettes RLMM_1.8.0.tar.gz
StartedAt: 2009-12-14 06:47:17 -0800 (Mon, 14 Dec 2009)
EndedAt: 2009-12-14 06:47:33 -0800 (Mon, 14 Dec 2009)
EllapsedTime: 15.8 seconds
RetCode: 0
Status: OK
CheckDir: RLMM.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.5-bioc/meat/RLMM.Rcheck'
* using R version 2.10.0 Patched (2009-10-27 r50222)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'RLMM/DESCRIPTION' ... OK
* this is package 'RLMM' version '1.8.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'RLMM' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
Classify : calc.meancov: no visible binding for global variable ‘dflag’
Found possibly global 'T' or 'F' in the following functions:
  Classify create_Thetafile normalize_Rawfiles plot_theta
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking examples ... NONE
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

RLMM.Rcheck/00install.out:

* install options are ' --no-html'

* installing *source* package ‘RLMM’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
* DONE (RLMM)