Package: ITALICS

Version: 2.6.0

Command: /Users/biocbuild/BBS/utils/build-universal.sh ITALICS_2.6.0.tar.gz /Library/Frameworks/R.framework/Versions/2.10/Resources/bin/R ITALICS.buildbin-libdir

StartedAt: 2009-12-14 07:46:28 -0800 (Mon, 14 Dec 2009)

EndedAt: 2009-12-14 07:46:39 -0800 (Mon, 14 Dec 2009)

EllapsedTime: 11.3 seconds

RetCode: 0

Status: OK

PackageFile: ITALICS_2.6.0.tgz

PackageFileSize: 376.8 KiB

                INSTALLATION WITH 'R CMD INSTALL --preclean --library=ITALICS.buildbin-libdir ITALICS_2.6.0.tar.gz'

* installing *source* package ‘ITALICS’ ...
** R
** inst
** preparing package for lazy loading

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Have fun with GLAD

For smoothing it is possible to use either
the AWS algorithm (Polzehl and Spokoiny, 2002)
or the HaarSeg algorithm (Ben-Yaacov and Eldar, Bioinformatics,  2008)

If you use the package with AWS, please cite:
Hupe et al. (Bioinformatics, 2004) and Polzehl and Spokoiny (2002)

If you use the package with HaarSeg, please cite:
Hupe et al. (Bioinformatics, 2004) and (Ben-Yaacov and Eldar, Bioinformatics, 2008)

For fast computation it is recommanded to use
the daglad function with smoothfunc=haarseg

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New options are available in daglad: see help for details.
Loading required package: oligoClasses
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: preprocessCore
Welcome to oligo version 1.10.0
Loading required package: RSQLite
Loading required package: DBI
** help
*** installing help indices
** building package indices ...
* DONE (ITALICS)