Package: BUS

Version: 1.2.0

Command: E:\biocbld\bbs-2.5-bioc\R\bin\R.exe CMD check --no-vignettes BUS_1.2.0.tar.gz

StartedAt: 2009-12-14 04:14:28 -0800 (Mon, 14 Dec 2009)

EndedAt: 2009-12-14 04:15:04 -0800 (Mon, 14 Dec 2009)

EllapsedTime: 35.7 seconds

RetCode: 0

Status: OK

CheckDir: BUS.Rcheck

Warnings: 0

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.5-bioc/meat/BUS.Rcheck'
* using R version 2.10.0 (2009-10-26)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'BUS/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'BUS' version '1.2.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'BUS' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
gene.pvalue: multiple local function definitions for 'fi' with
  different formal arguments
gene.trait.pvalue: multiple local function definitions for 'fi' with
  different formal arguments
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

* install options are ' --no-html'

* installing *source* package 'BUS' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: infotheo
** help
*** installing help indices
** building package indices ...
** MD5 sums
* DONE (BUS)