BioC experimental data: CHECK report for seqCNA.annot on perceval

Package: seqCNA.annot

Version: 0.99.1

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch seqCNA.annot_0.99.1.tar.gz

StartedAt: 2014-04-04 11:39:50 -0700 (Fri, 04 Apr 2014)

EndedAt: 2014-04-04 11:40:57 -0700 (Fri, 04 Apr 2014)

EllapsedTime: 67.3 seconds

RetCode: 0

Status:  OK

CheckDir: seqCNA.annot.Rcheck

Warnings: 0

* using log directory ‘/Users/biocbuild/bbs-2.13-data-experiment/meat/seqCNA.annot.Rcheck’
* using R version 3.0.3 (2014-03-06)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘seqCNA.annot/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘seqCNA.annot’ version ‘0.99.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘seqCNA.annot’ can be installed ... [1s/2s] OK
* checking installed package size ... NOTE
  installed size is 14.6Mb
  sub-directories of 1Mb or more:
    data  14.5Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [19s/19s] OK
Examples with CPU or elapsed time > 5s
      user system elapsed
hg18 9.063  0.456   9.523
hg19 7.763  0.476   8.336
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  ‘/Users/biocbuild/bbs-2.13-data-experiment/meat/seqCNA.annot.Rcheck/00check.log’
for details.

* installing *source* package ‘seqCNA.annot’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (seqCNA.annot)

name	user	system	elapsed
hg18	9.063	0.456	9.523
hg18_len	0.006	0.003	0.008
hg19	7.763	0.476	8.336
hg19_len	0.007	0.003	0.010
supported.builds	0.002	0.003	0.005