BioC experimental data: CHECK report for mammaPrintData on perceval

Package: mammaPrintData

Version: 0.99.9

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch mammaPrintData_0.99.9.tar.gz

StartedAt: 2014-04-04 11:19:34 -0700 (Fri, 04 Apr 2014)

EndedAt: 2014-04-04 11:21:48 -0700 (Fri, 04 Apr 2014)

EllapsedTime: 134.3 seconds

RetCode: 0

Status:  OK

CheckDir: mammaPrintData.Rcheck

Warnings: 0

* using log directory ‘/Users/biocbuild/bbs-2.13-data-experiment/meat/mammaPrintData.Rcheck’
* using R version 3.0.3 (2014-03-06)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘mammaPrintData/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘mammaPrintData’ version ‘0.99.9’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘mammaPrintData’ can be installed ... [2s/8s] OK
* checking installed package size ... NOTE
  installed size is 215.6Mb
  sub-directories of 1Mb or more:
    data      10.4Mb
    extdata  204.8Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [11s/11s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  ‘/Users/biocbuild/bbs-2.13-data-experiment/meat/mammaPrintData.Rcheck/00check.log’
for details.

* installing *source* package ‘mammaPrintData’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (mammaPrintData)

name	user	system	elapsed
buyseRGcy3	2.379	0.170	2.551
buyseRGcy5	1.161	0.176	1.338
glasRGcy3	1.437	0.064	1.502
glasRGcy5	1.547	0.049	1.596
mammaPrintData	2.852	0.213	3.065