BioC experimental data: CHECK report for ind1KG on zin1

Package: ind1KG

Version: 0.1.17

Command: /home/biocbuild/bbs-2.13-bioc/R/bin/R CMD check --no-vignettes --timings ind1KG_0.1.17.tar.gz

StartedAt: 2014-04-04 09:24:30 -0700 (Fri, 04 Apr 2014)

EndedAt: 2014-04-04 09:26:11 -0700 (Fri, 04 Apr 2014)

EllapsedTime: 100.3 seconds

RetCode: 0

Status:  OK

CheckDir: ind1KG.Rcheck

Warnings: 0

* using log directory ‘/home/biocbuild/bbs-2.13-data-experiment/meat/ind1KG.Rcheck’
* using R version 3.0.3 (2014-03-06)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ind1KG/DESCRIPTION’ ... OK
* this is package ‘ind1KG’ version ‘0.1.17’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ind1KG’ can be installed ... [2s/4s] OK
* checking installed package size ... NOTE
  installed size is 181.5Mb
  sub-directories of 1Mb or more:
    data     149.8Mb
    doc        1.0Mb
    pileups   30.5Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [22s/23s] OK
Examples with CPU or elapsed time > 5s
        user system elapsed
n240  13.105  0.312  14.459
c6snp  5.556  0.208   5.783
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  ‘/home/biocbuild/bbs-2.13-data-experiment/meat/ind1KG.Rcheck/00check.log’
for details.

* installing *source* package ‘ind1KG’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (ind1KG)

name	user	system	elapsed
c6snp	5.556	0.208	5.783
gw6c6.snp240	0.208	0.024	0.234
n240	13.105	0.312	14.459
oregdf	0.004	0.004	0.007
pup240_500k	1.372	0.052	1.429
pup240_disc	0.060	0.008	0.066
rsgdf	0.004	0.004	0.009
yri240_6	0.388	0.008	0.404