BioC experimental data: CHECK report for DrugVsDiseasedata on perceval

Package: DrugVsDiseasedata

Version: 0.99.6

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch DrugVsDiseasedata_0.99.6.tar.gz

StartedAt: 2014-04-04 10:32:12 -0700 (Fri, 04 Apr 2014)

EndedAt: 2014-04-04 10:35:33 -0700 (Fri, 04 Apr 2014)

EllapsedTime: 200.7 seconds

RetCode: 0

Status:  OK

CheckDir: DrugVsDiseasedata.Rcheck

Warnings: 0

* using log directory ‘/Users/biocbuild/bbs-2.13-data-experiment/meat/DrugVsDiseasedata.Rcheck’
* using R version 3.0.3 (2014-03-06)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘DrugVsDiseasedata/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘DrugVsDiseasedata’ version ‘0.99.6’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘DrugVsDiseasedata’ can be installed ... [2s/2s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... NOTE
prepare_Rd: DrugVsDiseasedata-package.Rd:33-35: Dropping empty section \seealso
prepare_Rd: GEOfactorvalues.Rd:18-20: Dropping empty section \references
prepare_Rd: annotationlist.Rd:17-18: Dropping empty section \source
prepare_Rd: genelist.Rd:14-16: Dropping empty section \source
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [1s/1s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  ‘/Users/biocbuild/bbs-2.13-data-experiment/meat/DrugVsDiseasedata.Rcheck/00check.log’
for details.

* installing *source* package ‘DrugVsDiseasedata’ ...
** data
*** moving datasets to lazyload DB
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (DrugVsDiseasedata)

name	user	system	elapsed
DrugVsDiseasedata-package	0.028	0.002	0.030
GEOfactorvalues	0.004	0.000	0.005
annotationlist	0.004	0.001	0.005
cytodisease	0.004	0.001	0.004
diseaseClusters	0.005	0.001	0.004
diseaseRL	0.004	0.000	0.004
diseaselabels	0.004	0.000	0.005
genelist	0.004	0.001	0.004