BioC 2.13: CHECK report for BuxcoR on moscato1

Package: BuxcoR

Version: 0.99.2

Command: rm -rf BuxcoR.buildbin-libdir && mkdir BuxcoR.buildbin-libdir && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=BuxcoR.buildbin-libdir BuxcoR_0.99.2.tar.gz >BuxcoR-install.out 2>&1 && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD check --library=BuxcoR.buildbin-libdir --install="check:BuxcoR-install.out" --force-multiarch --no-vignettes --timings BuxcoR_0.99.2.tar.gz && mv BuxcoR.buildbin-libdir/* BuxcoR.Rcheck/ && rmdir BuxcoR.buildbin-libdir

StartedAt: 2013-07-27 00:56:05 -0700 (Sat, 27 Jul 2013)

EndedAt: 2013-07-27 00:59:42 -0700 (Sat, 27 Jul 2013)

EllapsedTime: 216.5 seconds

RetCode: 0

Status: OK

CheckDir: BuxcoR.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.13-bioc/meat/BuxcoR.Rcheck'
* using R version 3.0.1 (2013-05-16)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'BuxcoR/DESCRIPTION' ... OK
* this is package 'BuxcoR' version '0.99.2'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'BuxcoR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ...
** running examples for arch 'i386' ... [19s] OK
Examples with CPU or elapsed time > 5s
        user system elapsed
parsing 5.77   0.01    5.89
BuxcoR  5.21   0.10    5.35
** running examples for arch 'x64' ... [27s] OK
Examples with CPU or elapsed time > 5s
        user system elapsed
BuxcoR  8.97   0.05    9.39
parsing 7.86   0.05    8.53
* checking for unstated dependencies in tests ... OK
* checking tests ...
** running tests for arch 'i386'
  Running 'runTests.R' [21s]
 [21s] OK
** running tests for arch 'x64'
  Running 'runTests.R' [26s]
 [26s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

BioC 2.13: CHECK report for BuxcoR on moscato1

Summary

Command output