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Package 35/140HostnameOS / ArchBUILDCHECKBUILD BIN
dsQTL 0.0.22
VJ Carey
Snapshot Date: 2013-01-17 10:15:10 -0800 (Thu, 17 Jan 2013)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/dsQTL
Last Changed Rev: 2174 / Revision: 2199
Last Changed Date: 2012-10-10 11:45:45 -0700 (Wed, 10 Oct 2012)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  OK 
lamb2 Linux (openSUSE 11.4) / x86_64  OK [ OK ]
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: dsQTL
Version: 0.0.22
Command: /home/biocbuild/bbs-2.12-bioc/R/bin/R CMD check --no-vignettes --timings dsQTL_0.0.22.tar.gz
StartedAt: 2013-01-17 12:41:21 -0800 (Thu, 17 Jan 2013)
EndedAt: 2013-01-17 12:49:19 -0800 (Thu, 17 Jan 2013)
EllapsedTime: 478.2 seconds
RetCode: 0
Status:  OK 
CheckDir: dsQTL.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.12-data-experiment/meat/dsQTL.Rcheck’
* using R Under development (unstable) (2012-12-17 r61365)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘dsQTL/DESCRIPTION’ ... OK
* this is package ‘dsQTL’ version ‘0.0.22’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘dsQTL’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 229.1Mb
  sub-directories of 1Mb or more:
    data   215.1Mb
    parts   13.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
getSNPlocs: no visible binding for global variable ‘ch2locs’
getSNPlocs: no visible binding for global variable ‘ch17locs’
* checking Rd files ... NOTE
prepare_Rd: dsQTL-package.Rd:53-54: Dropping empty section \seealso
prepare_Rd: dsQTL-package.Rd:55-56: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in vignettes ... NOTE
‘library’ or ‘require’ calls not declared from:
  ‘GGtools’ ‘rtracklayer’
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There were 4 notes.
See
  ‘/loc/home/biocbuild/bbs-2.12-data-experiment/meat/dsQTL.Rcheck/00check.log’
for details.

dsQTL.Rcheck/00install.out:

* installing *source* package ‘dsQTL’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘dsq.Rnw’ 
** testing if installed package can be loaded

* DONE (dsQTL)