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Package 22/28 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
RBGL1.12.0Li LongLast Changed Date: 2007-04-24 11:21:48 -0700 Last Changed Rev: 24214 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | OK | |
liverpool | Windows Server 2003 R2 (32-bit) | x64 | OK | [ OK ] | OK |
Package: RBGL |
Version: 1.12.0 |
Command: E:\biocbld\bbs-2.0-bioc\R\bin\R.exe CMD check RBGL_1.12.0.tar.gz |
RetCode: 0 |
Time: 130.5 seconds |
Status: OK |
CheckDir: RBGL.Rcheck |
Warnings: 0 |
* checking for working latex ... OK * using log directory 'E:/biocbld/bbs-2.0-biocLite/meat/RBGL.Rcheck' * using R version 2.5.0 (2007-04-23) * checking for file 'RBGL/DESCRIPTION' ... OK * this is package 'RBGL' version '1.12.0' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'RBGL' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking data for non-ASCII characters ... OK * checking for CRLF line endings in C/C++/Fortran sources/headers ... OK * checking for portable compilation flags in Makevars ... OK * checking for portable use of $BLAS_LIBS ... OK * creating RBGL-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating RBGL-manual.tex ... OK * checking RBGL-manual.tex ... OK
RBGL.Rcheck/00install.out:
installing R.css in E:/biocbld/bbs-2.0-biocLite/meat/RBGL.Rcheck ---------- Making package RBGL ------------ found boostIncl header sources and tar archive;\n using what is there. adding build stamp to DESCRIPTION installing NAMESPACE file and metadata making DLL ... making bbc.d from bbc.cpp making cliques.d from cliques.cpp making clusteringCoef.d from clusteringCoef.cpp making hcs.d from hcs.cpp making incrConnComp.d from incrConnComp.cpp making interfaces.d from interfaces.cpp making layout.d from layout.cpp making minST.d from minST.cpp making mincut.d from mincut.cpp making ordering.d from ordering.cpp making shortestPath.d from shortestPath.cpp making sna.d from sna.cpp making transitive_closure.d from transitive_closure.cpp making wavefront.d from wavefront.cpp g++ -Ie:/biocbld/bbs-2.0-bioc/R/include -Wall -O2 -IboostIncl -c bbc.cpp -o bbc.o c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator<typename _Alloc::pointer, std::vector<_Tp, _Alloc> >, size_t, const _Tp&) [with _Tp = boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double, boost::no_property> >, boost::no_property, boost::listS>::config::stored_vertex, _Alloc = std::allocator<boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double, boost::no_property> >, boost::no_property, boost::listS>::config::stored_vertex>]': c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function g++ -Ie:/biocbld/bbs-2.0-bioc/R/include -Wall -O2 -IboostIncl -c cliques.cpp -o cliques.o cliques.cpp: In function `void print_one_clique(oneCliqueType&)': cliques.cpp:110: warning: comparison between signed and unsigned integer expressions cliques.cpp: In function `void print_all_cliques(allCliquesType&, char*)': cliques.cpp:118: warning: comparison between signed and unsigned integer expressions cliques.cpp: In function `void extend_v2(Graph_ud&, std::vector<int, std::allocator<int> >&, std::vector<int, std::allocator<int> >&, int, int, int&, allCliquesType&)': cliques.cpp:138: warning: 'fixp' might be used uninitialized in this function cliques.cpp:139: warning: 'pos' might be used uninitialized in this function cliques.cpp:139: warning: 's' might be used uninitialized in this function c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator<typename _Alloc::pointer, std::vector<_Tp, _Alloc> >, size_t, const _Tp&) [with _Tp = boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>::config::stored_vertex, _Alloc = std::allocator<boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>::config::stored_vertex>]': c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function cliques.cpp: At global scope: cliques.cpp:116: warning: 'void print_all_cliques(allCliquesType&, char*)' defined but not used g++ -Ie:/biocbld/bbs-2.0-bioc/R/include -Wall -O2 -IboostIncl -c clusteringCoef.cpp -o clusteringCoef.o clusteringCoef.cpp: In function `int findIndex(int, const std::vector<int, std::allocator<int> >&)': clusteringCoef.cpp:132: warning: comparison between signed and unsigned integer expressions c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator<typename _Alloc::pointer, std::vector<_Tp, _Alloc> >, size_t, const _Tp&) [with _Tp = boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>::config::stored_vertex, _Alloc = std::allocator<boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>::config::stored_vertex>]': c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function g++ -Ie:/biocbld/bbs-2.0-bioc/R/include -Wall -O2 -IboostIncl -c hcs.cpp -o hcs.o hcs.cpp: In function `void output_graph_labels(const V_Label&, const char*)': hcs.cpp:27: warning: comparison between signed and unsigned integer expressions hcs.cpp: In function `void build_subgraph(Cluster&, const Graph_ud&, const V_Label&, Graph_ud&, V_Label&)': hcs.cpp:62: warning: comparison between signed and unsigned integer expressions hcs.cpp: In function `void remove_vertices(int, const Graph_ud&, const V_Label&, Graph_ud&, V_Label&)': hcs.cpp:117: warning: comparison between signed and unsigned integer expressions hcs.cpp: In function `dst cluster_distance(const Graph_ud&, V_Label&, int, V_Label&)': hcs.cpp:134: warning: comparison between signed and unsigned integer expressions hcs.cpp:138: warning: comparison between signed and unsigned integer expressions hcs.cpp: In function `void adopt_singleton(const Graph_ud&, V_Label&, ClusterResult&)': hcs.cpp:206: warning: comparison between signed and unsigned integer expressions hcs.cpp: In function `void remove_clusters(ClusterResult&, const Graph_ud&, const V_Label&, Graph_ud&, V_Label&)': hcs.cpp:248: warning: comparison between signed and unsigned integer expressions hcs.cpp: In function `void HCS_internal(const Graph_ud&, V_Label&, ClusterResult&)': hcs.cpp:288: warning: comparison between signed and unsigned integer expressions hcs.cpp: In function `SEXPREC* HCS_loop(Graph_ud&, V_Label&)': hcs.cpp:363: warning: comparison between signed and unsigned integer expressions hcs.cpp:393: warning: comparison between signed and unsigned integer expressions hcs.cpp:397: warning: comparison between signed and unsigned integer expressions hcs.cpp:353: warning: unused variable 'found_new_cluster' c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator<typename _Alloc::pointer, std::vector<_Tp, _Alloc> >, size_t, const _Tp&) [with _Tp = boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>::config::stored_vertex, _Alloc = std::allocator<boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>::config::stored_vertex>]': c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator<typename _Alloc::pointer, std::vector<_Tp, _Alloc> >, size_t, const _Tp&) [with _Tp = boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_capacity_t, size_t, boost::property<boost::edge_residual_capacity_t, size_t, boost::property<boost::edge_reverse_t, boost::edge_connectivity(VertexListGraph&, OutputIterator)::Tr_edge_desc, boost::no_property> > >, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_capacity_t, size_t, boost::property<boost::edge_residual_capacity_t, size_t, boost::property<boost::edge_reverse_t, boost::edge_connectivity(VertexListGraph&, OutputIterator)::Tr_edge_desc, boost::no_property> > >, boost::no_property, boost::listS>::config::stored_vertex, _Alloc = std::allocator<boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_capacity_t, size_t, boost::property<boost::edge_residual_capacity_t, size_t, boost::property<boost::edge_reverse_t, boost::edge_connectivity(VertexListGraph&, OutputIterator)::Tr_edge_desc, boost::no_property> > >, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_capacity_t, size_t, boost::property<boost::edge_residual_capacity_t, size_t, boost::property<boost::edge_reverse_t, boost::edge_connectivity(VertexListGraph&, OutputIterator)::Tr_edge_desc, boost::no_property> > >, boost::no_property, boost::listS>::config::stored_vertex>]': c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function boostIncl/boost/graph/edge_connectivity.hpp: In function `typename boost::graph_traits<G>::edges_size_type boost::min_cut(VertexListGraph&, OutputIterator, OutputIterator) [with VertexListGraph = const R_adjacency_list<boost::undirectedS, double>, OutputIterator = std::back_insert_iterator<Cluster>]': boostIncl/boost/graph/edge_connectivity.hpp:32: warning: 'p' might be used uninitialized in this function hcs.cpp: At global scope: hcs.cpp:25: warning: 'void output_graph_labels(const V_Label&, const char*)' defined but not used hcs.cpp:33: warning: 'void output_graph(const Graph_ud&, const char*)' defined but not used g++ -Ie:/biocbld/bbs-2.0-bioc/R/include -Wall -O2 -IboostIncl -c incrConnComp.cpp -o incrConnComp.o incrConnComp.cpp: In function `SEXPREC* BGL_incr_comp_internal(SEXPREC*, SEXPREC*, SEXPREC*, E_IC_METHOD)': incrConnComp.cpp:67: warning: comparison between signed and unsigned integer expressions c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator<typename _Alloc::pointer, std::vector<_Tp, _Alloc> >, size_t, const _Tp&) [with _Tp = boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>::config::stored_vertex, _Alloc = std::allocator<boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>::config::stored_vertex>]': c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function g++ -Ie:/biocbld/bbs-2.0-bioc/R/include -Wall -O2 -IboostIncl -c interfaces.cpp -o interfaces.o interfaces.cpp: In function `SEXPREC* BGL_articulation_points_U(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)': interfaces.cpp:310: warning: comparison between signed and unsigned integer expressions interfaces.cpp: In function `SEXPREC* BGL_astar_search_D(SEXPREC*, SEXPREC*, SEXPREC*)': interfaces.cpp:404: warning: 'ansList' might be used uninitialized in this function c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator<typename _Alloc::pointer, std::vector<_Tp, _Alloc> >, size_t, const _Tp&) [with _Tp = boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>::config::stored_vertex, _Alloc = std::allocator<boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>::config::stored_vertex>]': c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function interfaces.cpp: In function `SEXPREC* BGL_tsort_D(SEXPREC*, SEXPREC*, SEXPREC*)': interfaces.cpp:66: warning: 'tsout' might be used uninitialized in this function c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator<typename _Alloc::pointer, std::vector<_Tp, _Alloc> >, size_t, const _Tp&) [with _Tp = boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>::config::stored_vertex, _Alloc = std::allocator<boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>::config::stored_vertex>]': c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator<typename _Alloc::pointer, std::vector<_Tp, _Alloc> >, size_t, const _Tp&) [with _Tp = boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_capacity_t, size_t, boost::property<boost::edge_residual_capacity_t, size_t, boost::property<boost::edge_reverse_t, boost::edge_connectivity(VertexListGraph&, OutputIterator)::Tr_edge_desc, boost::no_property> > >, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_capacity_t, size_t, boost::property<boost::edge_residual_capacity_t, size_t, boost::property<boost::edge_reverse_t, boost::edge_connectivity(VertexListGraph&, OutputIterator)::Tr_edge_desc, boost::no_property> > >, boost::no_property, boost::listS>::config::stored_vertex, _Alloc = std::allocator<boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_capacity_t, size_t, boost::property<boost::edge_residual_capacity_t, size_t, boost::property<boost::edge_reverse_t, boost::edge_connectivity(VertexListGraph&, OutputIterator)::Tr_edge_desc, boost::no_property> > >, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_capacity_t, size_t, boost::property<boost::edge_residual_capacity_t, size_t, boost::property<boost::edge_reverse_t, boost::edge_connectivity(VertexListGraph&, OutputIterator)::Tr_edge_desc, boost::no_property> > >, boost::no_property, boost::listS>::config::stored_vertex>]': c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function boostIncl/boost/graph/edge_connectivity.hpp: In function `typename boost::graph_traits<G>::degree_size_type boost::edge_connectivity(VertexListGraph&, OutputIterator) [with VertexListGraph = Graph_ud, OutputIterator = std::back_insert_iterator<std::vector<BGL_edge_connectivity_U(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)::Edge, std::allocator<BGL_edge_connectivity_U(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)::Edge> > >]': boostIncl/boost/graph/edge_connectivity.hpp:32: warning: 'p' might be used uninitialized in this function g++ -Ie:/biocbld/bbs-2.0-bioc/R/include -Wall -O2 -IboostIncl -c layout.cpp -o layout.o layout.cpp: In function `SEXPREC* BGL_gursov_atun_layout(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)': layout.cpp:219: warning: unused variable 'w' layout.cpp:220: warning: unused variable 'h' c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator<typename _Alloc::pointer, std::vector<_Tp, _Alloc> >, size_t, const _Tp&) [with _Tp = boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double>, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double>, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>::config::stored_vertex, _Alloc = std::allocator<boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double>, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double>, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>::config::stored_vertex>]': c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator<typename _Alloc::pointer, std::vector<_Tp, _Alloc> >, size_t, const _Tp&) [with _Tp = boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>::config::stored_vertex, _Alloc = std::allocator<boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>::config::stored_vertex>]': c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function g++ -Ie:/biocbld/bbs-2.0-bioc/R/include -Wall -O2 -IboostIncl -c minST.cpp -o minST.o minST.cpp: In function `SEXPREC* BGL_PRIM_U(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)': minST.cpp:99: warning: comparison between signed and unsigned integer expressions minST.cpp:103: warning: comparison between signed and unsigned integer expressions minST.cpp:93: warning: unused variable 'vlist' c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator<typename _Alloc::pointer, std::vector<_Tp, _Alloc> >, size_t, const _Tp&) [with _Tp = boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>::config::stored_vertex, _Alloc = std::allocator<boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>::config::stored_vertex>]': c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator<typename _Alloc::pointer, std::vector<_Tp, _Alloc> >, size_t, const _Tp&) [with _Tp = boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>::config::stored_vertex, _Alloc = std::allocator<boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>::config::stored_vertex>]': c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function g++ -Ie:/biocbld/bbs-2.0-bioc/R/include -Wall -O2 -IboostIncl -c mincut.cpp -o mincut.o c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator<typename _Alloc::pointer, std::vector<_Tp, _Alloc> >, size_t, const _Tp&) [with _Tp = boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::edge_connectivity(VertexListGraph&, OutputIterator)::Tr_edge_desc, boost::no_property> > >, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::edge_connectivity(VertexListGraph&, OutputIterator)::Tr_edge_desc, boost::no_property> > >, boost::no_property, boost::listS>::config::stored_vertex, _Alloc = std::allocator<boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::edge_connectivity(VertexListGraph&, OutputIterator)::Tr_edge_desc, boost::no_property> > >, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::edge_connectivity(VertexListGraph&, OutputIterator)::Tr_edge_desc, boost::no_property> > >, boost::no_property, boost::listS>::config::stored_vertex>]': c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator<typename _Alloc::pointer, std::vector<_Tp, _Alloc> >, size_t, const _Tp&) [with _Tp = boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>::config::stored_vertex, _Alloc = std::allocator<boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>::config::stored_vertex>]': c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator<typename _Alloc::pointer, std::vector<_Tp, _Alloc> >, size_t, const _Tp&) [with _Tp = boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_capacity_t, size_t, boost::property<boost::edge_residual_capacity_t, size_t, boost::property<boost::edge_reverse_t, boost::edge_connectivity(VertexListGraph&, OutputIterator)::Tr_edge_desc, boost::no_property> > >, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_capacity_t, size_t, boost::property<boost::edge_residual_capacity_t, size_t, boost::property<boost::edge_reverse_t, boost::edge_connectivity(VertexListGraph&, OutputIterator)::Tr_edge_desc, boost::no_property> > >, boost::no_property, boost::listS>::config::stored_vertex, _Alloc = std::allocator<boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_capacity_t, size_t, boost::property<boost::edge_residual_capacity_t, size_t, boost::property<boost::edge_reverse_t, boost::edge_connectivity(VertexListGraph&, OutputIterator)::Tr_edge_desc, boost::no_property> > >, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_capacity_t, size_t, boost::property<boost::edge_residual_capacity_t, size_t, boost::property<boost::edge_reverse_t, boost::edge_connectivity(VertexListGraph&, OutputIterator)::Tr_edge_desc, boost::no_property> > >, boost::no_property, boost::listS>::config::stored_vertex>]': c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function boostIncl/boost/graph/edge_connectivity.hpp: In function `typename boost::graph_traits<G>::edges_size_type boost::min_cut(VertexListGraph&, OutputIterator, OutputIterator) [with VertexListGraph = Graph_ud, OutputIterator = std::back_insert_iterator<std::vector<BGL_min_cut_U::Vertex, std::allocator<BGL_min_cut_U::Vertex> > >]': boostIncl/boost/graph/edge_connectivity.hpp:32: warning: 'p' might be used uninitialized in this function g++ -Ie:/biocbld/bbs-2.0-bioc/R/include -Wall -O2 -IboostIncl -c ordering.cpp -o ordering.o ordering.cpp: In function `SEXPREC* BGL_king_ordering(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)': ordering.cpp:172: warning: unused variable 'delta' c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator<typename _Alloc::pointer, std::vector<_Tp, _Alloc> >, size_t, const _Tp&) [with _Tp = boost::detail::adj_list_gen<boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double, boost::no_property> > >, boost::no_property, boost::no_property, boost::listS>, boost::vecS, boost::setS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double, boost::no_property> > >, boost::no_property, boost::no_property, boost::listS>::config::stored_vertex, _Alloc = std::allocator<boost::detail::adj_list_gen<boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double, boost::no_property> > >, boost::no_property, boost::no_property, boost::listS>, boost::vecS, boost::setS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::property<boost::vertex_degree_t, int, boost::property<boost::vertex_priority_t, double, boost::no_property> > >, boost::no_property, boost::no_property, boost::listS>::config::stored_vertex>]': c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator<typename _Alloc::pointer, std::vector<_Tp, _Alloc> >, size_t, const _Tp&) [with _Tp = boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>::config::stored_vertex, _Alloc = std::allocator<boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>::config::stored_vertex>]': c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator<typename _Alloc::pointer, std::vector<_Tp, _Alloc> >, size_t, const _Tp&) [with _Tp = boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>::config::stored_vertex, _Alloc = std::allocator<boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>::config::stored_vertex>]': c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function g++ -Ie:/biocbld/bbs-2.0-bioc/R/include -Wall -O2 -IboostIncl -c shortestPath.cpp -o shortestPath.o shortestPath.cpp: In function `SEXPREC* BGL_bellman_ford_shortest_paths(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)': shortestPath.cpp:79: warning: unused variable 'j' shortestPath.cpp: In function `SEXPREC* BGL_floyd_warshall_all_pairs_shortest_paths_D(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)': shortestPath.cpp:180: warning: unused variable 'V' c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator<typename _Alloc::pointer, std::vector<_Tp, _Alloc> >, size_t, const _Tp&) [with _Tp = boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>::config::stored_vertex, _Alloc = std::allocator<boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>::config::stored_vertex>]': c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator<typename _Alloc::pointer, std::vector<_Tp, _Alloc> >, size_t, const _Tp&) [with _Tp = boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>::config::stored_vertex, _Alloc = std::allocator<boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>::config::stored_vertex>]': c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator<typename _Alloc::pointer, std::vector<_Tp, _Alloc> >, size_t, const _Tp&) [with _Tp = boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>::config::stored_vertex, _Alloc = std::allocator<boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>::config::stored_vertex>]': c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function g++ -Ie:/biocbld/bbs-2.0-bioc/R/include -Wall -O2 -IboostIncl -c sna.cpp -o sna.o c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In copy constructor `std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = SubgraphAsSet, _Alloc = std::allocator<SubgraphAsSet>]': c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h: In member function `std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = SubgraphAsSet, _Alloc = std::allocator<SubgraphAsSet>]': c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h:715: warning: '__result' might be used uninitialized in this function c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_insert_aux(__gnu_cxx::__normal_iterator<typename _Alloc::pointer, std::vector<_Tp, _Alloc> >, const _Tp&) [with _Tp = CliqueVector, _Alloc = std::allocator<CliqueVector>]': c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator<typename _Alloc::pointer, std::vector<_Tp, _Alloc> >, size_t, const _Tp&) [with _Tp = boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>::config::stored_vertex, _Alloc = std::allocator<boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>::config::stored_vertex>]': c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator<typename _Alloc::pointer, std::vector<_Tp, _Alloc> >, size_t, const _Tp&) [with _Tp = boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, lambdaSets(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)::Tr_edge_desc, boost::no_property> > >, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, lambdaSets(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)::Tr_edge_desc, boost::no_property> > >, boost::no_property, boost::listS>::config::stored_vertex, _Alloc = std::allocator<boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, lambdaSets(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)::Tr_edge_desc, boost::no_property> > >, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, lambdaSets(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)::Tr_edge_desc, boost::no_property> > >, boost::no_property, boost::listS>::config::stored_vertex>]': c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator<typename _Alloc::pointer, std::vector<_Tp, _Alloc> >, size_t, const _Tp&) [with _Tp = boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>::config::stored_vertex, _Alloc = std::allocator<boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>::config::stored_vertex>]': c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function g++ -Ie:/biocbld/bbs-2.0-bioc/R/include -Wall -O2 -IboostIncl -c transitive_closure.cpp -o transitive_closure.o c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator<typename _Alloc::pointer, std::vector<_Tp, _Alloc> >, size_t, const _Tp&) [with _Tp = std::vector<size_t, std::allocator<size_t> >, _Alloc = std::allocator<std::vector<size_t, std::allocator<size_t> > >]': c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator<typename _Alloc::pointer, std::vector<_Tp, _Alloc> >, size_t, const _Tp&) [with _Tp = boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>::config::stored_vertex, _Alloc = std::allocator<boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>::config::stored_vertex>]': c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function g++ -Ie:/biocbld/bbs-2.0-bioc/R/include -Wall -O2 -IboostIncl -c wavefront.cpp -o wavefront.o c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator<typename _Alloc::pointer, std::vector<_Tp, _Alloc> >, size_t, const _Tp&) [with _Tp = boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>::config::stored_vertex, _Alloc = std::allocator<boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>::config::stored_vertex>]': c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function c:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function windres -I e:/biocbld/bbs-2.0-bioc/R/include -i RBGL_res.rc -o RBGL_res.o g++ -shared -s -o RBGL.dll RBGL.def bbc.o cliques.o clusteringCoef.o hcs.o incrConnComp.o interfaces.o layout.o minST.o mincut.o ordering.o shortestPath.o sna.o transitive_closure.o wavefront.o RBGL_res.o -Le:/biocbld/bbs-2.0-bioc/R/bin -lR ... DLL made installing DLL installing R files save image Loading required package: graph Loading required package: Biobase Loading required package: tools Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()'. To cite Bioconductor, see 'citation("Biobase")' and for packages 'citation(pkgname)'. installing inst files installing data files installing man source files installing indices not zipping data installing help >>> Building/Updating help pages for package 'RBGL' Formats: text html latex example chm FileDep text html latex example chm RBGL.overview text html latex chm astarSearch text html latex example chm bandwidth text html latex example chm bccluster text html latex example chm bellman.ford.sp text html latex example chm betweenness text html latex example chm bfs text html latex example chm biConnComp text html latex example chm clusteringCoef text html latex example chm clusteringCoefAppr text html latex example chm coloring text html latex example chm connectedComp text html latex example chm dag.sp text html latex example chm dijkstra.sp text html latex example chm edgeConn text html latex example chm extractPath text html latex example chm floyd.warshall.all.pairs.sp text html latex example chm gprofile text html latex example chm graphGenerator text html latex example chm highlyConnSG text html latex example chm incrConnComp text html latex example chm is.triangulated text html latex example chm isomorphism text html latex example chm johnson.all.pairs.sp text html latex example chm kCliques text html latex example chm kCores text html latex example chm lambdaSets text html latex example chm layout text html latex example chm maxClique text html latex example chm maxFlow text html latex example chm minCut text html latex example chm mstree.kruskal text html latex example chm mstree.prim text html latex example chm ordering text html latex example chm removeSelfLoops text html latex example chm separates text html latex example chm sp.between text html latex example chm strongComp text html latex example chm transClosure text html latex example chm transitivity text html latex example chm tsort text html latex example chm wavefront text html latex example chm Microsoft HTML Help Compiler 4.74.8702 Compiling e:\biocbld\bbs-2.0-biocLite\meat\RBGL.Rcheck\00_pkg_src\RBGL\chm\RBGL.chm Compile time: 0 minutes, 2 seconds 44 Topics 197 Local links 0 Internet links 1 Graphic Created e:\biocbld\bbs-2.0-biocLite\meat\RBGL.Rcheck\00_pkg_src\RBGL\chm\RBGL.chm, 61,185 bytes Compression decreased file by 84,746 bytes. adding MD5 sums * DONE (RBGL)