Package: Biobase

Version: 1.14.0

Command: E:\biocbld\bbs-2.0-bioc\R\bin\R.exe CMD check Biobase_1.14.0.tar.gz

RetCode: 0

Time: 69.6 seconds

Status: OK

CheckDir: Biobase.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory 'E:/biocbld/bbs-2.0-biocLite/meat/Biobase.Rcheck'
* using R version 2.5.0 (2007-04-23)
* checking for file 'Biobase/DESCRIPTION' ... OK
* this is package 'Biobase' version '1.14.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'Biobase' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking for CRLF line endings in C/C++/Fortran sources/headers ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating Biobase-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating Biobase-manual.tex ... OK
* checking Biobase-manual.tex ... OK

installing R.css in E:/biocbld/bbs-2.0-biocLite/meat/Biobase.Rcheck


---------- Making package Biobase ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making Rinit.d from Rinit.c
making envir.d from envir.c
making matchpt.d from matchpt.c
gcc   -Ie:/biocbld/bbs-2.0-bioc/R/include  -Wall -O3 -std=gnu99   -c Rinit.c -o Rinit.o
gcc   -Ie:/biocbld/bbs-2.0-bioc/R/include  -Wall -O3 -std=gnu99   -c envir.c -o envir.o
gcc   -Ie:/biocbld/bbs-2.0-bioc/R/include  -Wall -O3 -std=gnu99   -c matchpt.c -o matchpt.o
windres -I e:/biocbld/bbs-2.0-bioc/R/include  -i Biobase_res.rc -o Biobase_res.o
gcc  -shared -s  -o Biobase.dll Biobase.def Rinit.o envir.o matchpt.o Biobase_res.o  -Le:/biocbld/bbs-2.0-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  save image
Loading required package: tools
  installing inst files
  installing data files
  installing man source files
  installing indices
Loading required package: methods
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'Biobase'
     Formats: text html latex example chm 
  Aggregate                         text    html    latex   example chm
  Biobase-package                   text    html    latex           chm
  ScalarCharacter-class             text    html    latex   example chm
  abstract                          text    html    latex           chm
  addVig2Menu                       text    html    latex   example chm
  annotatedDataFrameFrom-methods    text    html    latex           chm
  annotation                        text    html    latex           chm
  assayData                         text    html    latex           chm
  biocReposList                     text    html    latex   example chm
  cache                             text    html    latex   example chm
  class.AnnotatedDataFrame          text    html    latex   example chm
  class.AssayData                   text    html    latex           chm
  class.ExpressionSet               text    html    latex   example chm
  class.MIAME                       text    html    latex           chm
  class.MultiSet                    text    html    latex   example chm
  class.SnpSet                      text    html    latex           chm
  class.Versioned                   text    html    latex   example chm
  class.VersionedBiobase            text    html    latex   example chm
  class.Versions                    text    html    latex   example chm
  class.VersionsNull                text    html    latex   example chm
  class.aggregator                  text    html    latex           chm
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  classVersion                      text    html    latex   example chm
  combine                           text    html    latex   example chm
  contents                          text    html    latex   example chm
  copyEnv                           text    html    latex   example chm
  copySubstitute                    text    html    latex   example chm
  createPackage                     text    html    latex   example chm
  data.aaMap                        text    html    latex   example chm
  data.eset                         text    html    latex   example chm
  data.geneData                     text    html    latex   example chm
  data.reporter                     text    html    latex   example chm
  data.sample.ExpressionSet         text    html    latex   example chm
  data.sample.eSet                  text    html    latex   example chm
  data.sample.exprSet.1             text    html    latex   example chm
  data.sample.exprSet               text    html    latex   example chm
  defunct                           text    html    latex           chm
  description                       text    html    latex           chm
  dims                              text    html    latex           chm
  dumpPackTxt                       text    html    latex   example chm
  esApply                           text    html    latex   example chm
  exprs                             text    html    latex           chm
  featureNames                      text    html    latex           chm
  getPkgVigs                        text    html    latex   example chm
  internals                         text    html    latex           chm
  isCurrent                         text    html    latex   example chm
  isUnique                          text    html    latex   example chm
  isVersioned                       text    html    latex   example chm
  lcSuffix                          text    html    latex   example chm
  listLen                           text    html    latex   example chm
  makeDataPackage                   text    html    latex   example chm
  matchpt                           text    html    latex   example chm
  multiassign                       text    html    latex   example chm
  note                              text    html    latex   example chm
  notes                             text    html    latex           chm
  openPDF                           text    html    latex   example chm
  openVignette                      text    html    latex   example chm
  package.version                   text    html    latex   example chm
  phenoData                         text    html    latex           chm
  read.AnnotatedDataFrame           text    html    latex   example chm
  read.MIAME                        text    html    latex   example chm
  read.exprSet                      text    html    latex   example chm
  read.phenoData                    text    html    latex   example chm
  readExpressionSet                 text    html    latex   example chm
  reporterInfo                      text    html    latex           chm
  reverseSplit                      text    html    latex   example chm
  rowQ                              text    html    latex   example chm
  selectSome                        text    html    latex   example chm
  storageMode                       text    html    latex           chm
  strbreak                          text    html    latex   example chm
  testBioCConnection                text    html    latex   example chm
  updateObject                      text    html    latex   example chm
  updateOldESet                     text    html    latex   example chm
  userQuery                         text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.0-biocLite\meat\Biobase.Rcheck\00_pkg_src\Biobase\chm\Biobase.chm


Compile time: 0 minutes, 1 second
82	Topics
788	Local links
5	Internet links
1	Graphic


Created e:\biocbld\bbs-2.0-biocLite\meat\Biobase.Rcheck\00_pkg_src\Biobase\chm\Biobase.chm, 129,970 bytes
Compression decreased file by 284,672 bytes.
  adding MD5 sums

* DONE (Biobase)