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| Package 171/214 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
rflowcyt1.8.0N. LeMeurLast Changed Date: 2007-04-24 11:21:48 -0700 Last Changed Rev: 24214 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | WARNINGS | |
| wellington | Linux (SUSE 9.2) | i686 | OK | WARNINGS | ||
| lemming | Windows Server 2003 (32-bit) | x64 | OK | [ WARNINGS ] | OK |
| Package: rflowcyt |
| Version: 1.8.0 |
| Command: D:\biocbld\bbs-2.0-bioc\R\bin\R.exe CMD check rflowcyt_1.8.0.tar.gz |
| RetCode: 0 |
| Time: 726.4 seconds |
| Status: WARNINGS |
| CheckDir: rflowcyt.Rcheck |
| Warnings: 3 |
* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.0-bioc/meat/rflowcyt.Rcheck'
* using R version 2.5.1 (2007-06-27)
* checking for file 'rflowcyt/DESCRIPTION' ... OK
* this is package 'rflowcyt' version '1.8.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'rflowcyt' can be installed ... WARNING
Found the following significant warnings:
missing link(s): xyplot
missing link(s): xyplot xyplot xyplot lattice lattice xyplot
See 'D:/biocbld/bbs-2.0-bioc/meat/rflowcyt.Rcheck/00install.out' for details.
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... WARNING
parallel:
function(x, data, ...)
parallel.coordinates:
function(x, varlabpos, variable.names, my.ylab, my.ylim, at.y,
each.ylab, scaled, group, group.lty, group.col, group.lwd,
superimpose)
See section 'Generic functions and methods' of the 'Writing R Extensions'
manual.
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented S4 methods:
generic '[[' and siglist 'FCS,ANY,ANY'
generic '[[' and siglist 'FCSmetadata,ANY,ANY'
generic '[[<-' and siglist 'FCS,ANY,ANY'
generic '[[<-' and siglist 'FCSmetadata,ANY,ANY'
All user-level objects in a package (including S4 classes and methods)
should have documentation entries.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating rflowcyt-Ex.R ... OK
* checking examples ... OK
* checking tests ...
make[1]: Entering directory `/cygdrive/d/biocbld/bbs-2.0-bioc/meat/rflowcyt.Rcheck/tests'
Running 'FCSclass-tests.R'
Running 'FCSgateclass-tests.R'
Running 'FCSmetadataclass-tests.R'
Running 'fluors.FCS.R'
Running 'read.FCS-tests.R'
Running 'runflowcytests-tests.R'
make[1]: Leaving directory `/cygdrive/d/biocbld/bbs-2.0-bioc/meat/rflowcyt.Rcheck/tests'
OK
* checking package vignettes in 'inst/doc' ... OK
* creating rflowcyt-manual.tex ... OK
* checking rflowcyt-manual.tex ... OK
WARNING: There were 3 warnings, see
D:/biocbld/bbs-2.0-bioc/meat/rflowcyt.Rcheck/00check.log
for details
rflowcyt.Rcheck/00install.out:
installing R.css in D:/biocbld/bbs-2.0-bioc/meat/rflowcyt.Rcheck
---------- Making package rflowcyt ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
installing R files
installing inst files
installing man source files
installing indices
installing help
>>> Building/Updating help pages for package 'rflowcyt'
Formats: text html latex example chm
ContourScatterPlot text html latex example chm
FCS-class text html latex example chm
FCSgate-class text html latex example chm
FCSggobi-class text html latex example chm
FCSmetadata-class text html latex example chm
FCSsummary-class text html latex example chm
FHCRC.HVTNFCS text html latex example chm
ImageParCoord text html latex example chm
KS.flowcytest text html latex example chm
MODE text html latex example chm
PercentPos.FCS text html latex example chm
ProbBin.FCS text html latex example chm
ProbBin.flowcytest text html latex example chm
ROC.FCS text html latex example chm
VRC.HVTNFCS text html latex example chm
WLR.flowcytest text html latex example chm
add.parallel.coordinates text html latex example chm
add.parallelCoordinates text html latex example chm
addParameter-methods text html latex chm
boxplot.FCS text html latex example chm
missing link(s): xyplot
breakpoints.ProbBin text html latex example chm
checkvars-methods text html latex chm
coerce-FCSformat text html latex example chm
coerce-methods text html latex chm
convertS3toS4 text html latex example chm
createGate text html latex example chm
cytoSet-class text html latex example chm
dim.FCS-methods text html latex chm
emp.f text html latex example chm
equals-methods text html latex chm
extractGateHistory text html latex example chm
extractGatedData text html latex example chm
fcs.type text html latex example chm
fixvars-methods text html latex chm
fluors-methods text html latex chm
gate.IPC text html latex example chm
get.h text html latex example chm
get.num.modes text html latex example chm
get.p text html latex example chm
ggobi-methods text html latex chm
legend.CSP text html latex example chm
make.grid text html latex example chm
metaData-methods text html latex chm
pairs.CSP text html latex example chm
parallel.coordinates text html latex example chm
parallelCoordinates text html latex example chm
pkci2.flowcytest text html latex example chm
plot-methods text html latex chm
plot.ProbBin.FCS text html latex example chm
plot2sets.FCS text html latex example chm
plotECDF.FCS text html latex example chm
missing link(s): xyplot xyplot xyplot lattice lattice xyplot
plotQA.FCS text html latex example chm
plotdensity.FCS text html latex example chm
plotvar.FCS text html latex example chm
print-methods text html latex chm
read.FCS text html latex example chm
read.series.FCS text html latex example chm
rect.box.idx text html latex example chm
rflowcyt-defunct text html latex chm
runflowcytests text html latex example chm
show-methods text html latex chm
showgate.FCS text html latex example chm
standard text html latex example chm
subset-methods text html latex chm
subset2-methods text html latex chm
subset2assign-methods text html latex chm
subsetassign-methods text html latex chm
summary-methods text html latex chm
summary.ProbBin.FCS text html latex example chm
xgobi.FCS text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling d:\biocbld\bbs-2.0-bioc\meat\rflowcyt.Rcheck\00_pkg_src\rflowcyt\chm\rflowcyt.chm
Compile time: 0 minutes, 0 seconds
71 Topics
560 Local links
1 Internet link
1 Graphic
Created d:\biocbld\bbs-2.0-bioc\meat\rflowcyt.Rcheck\00_pkg_src\rflowcyt\chm\rflowcyt.chm, 176,759 bytes
Compression decreased file by 291,049 bytes.
preparing package rflowcyt for lazy loading
Loading required package: survival
Loading required package: splines
Loading required package: xtable
Loading required package: KernSmooth
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Loading required package: MASS
Loading required package: grid
Loading required package: hexbin
Loading required package: lattice
Loading required package: rfcdmin
Loading required package: fields
Loading required package: locfit
Loading required package: akima
Loading required package: splancs
Loading required package: sp
Creating a new generic function for "print" in "rflowcyt"
adding MD5 sums
* DONE (rflowcyt)