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Package 62/214 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
exonmap1.0.07Michal OkoniewskiLast Changed Date: 2007-08-22 06:18:04 -0700 Last Changed Rev: 26584 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | WARNINGS | |
wellington | Linux (SUSE 9.2) | i686 | OK | ERROR | ||
lemming | Windows Server 2003 (32-bit) | x64 | OK | [ WARNINGS ] | OK |
Package: exonmap |
Version: 1.0.07 |
Command: D:\biocbld\bbs-2.0-bioc\R\bin\R.exe CMD check exonmap_1.0.07.tar.gz |
RetCode: 0 |
Time: 88.5 seconds |
Status: WARNINGS |
CheckDir: exonmap.Rcheck |
Warnings: 1 |
* checking for working latex ... OK * using log directory 'D:/biocbld/bbs-2.0-bioc/meat/exonmap.Rcheck' * using R version 2.5.1 (2007-06-27) * checking for file 'exonmap/DESCRIPTION' ... OK * this is package 'exonmap' version '1.0.07' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'exonmap' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... WARNING Codoc mismatches from documentation object 'splanova': splanova Code: function(x, genesin, group, base, thr = 0.05, probes.min = 4, exonic = TRUE, debug = 0) Docs: function(x, genesin, group, base, thr = 0.05, probes.min = 4, exonic = T, debug = 0) Mismatches in argument default values: Name: exonic Code: TRUE Docs: T * checking Rd \usage sections ... OK * checking data for non-ASCII characters ... OK * creating exonmap-Ex.R ... OK * checking examples ... OK * creating exonmap-manual.tex ... OK * checking exonmap-manual.tex ... OK WARNING: There was 1 warning, see D:/biocbld/bbs-2.0-bioc/meat/exonmap.Rcheck/00check.log for details
exonmap.Rcheck/00install.out:
installing R.css in D:/biocbld/bbs-2.0-bioc/meat/exonmap.Rcheck ---------- Making package exonmap ------------ adding build stamp to DESCRIPTION installing R files installing inst files installing data files installing man source files installing indices not zipping data installing help >>> Building/Updating help pages for package 'exonmap' Formats: text html latex example chm PC-class text html latex example chm Splanova-class text html latex example chm X.toY text html latex example chm array.subset text html latex example chm gene.details text html latex example chm gene.legend text html latex example chm gene.strip text html latex example chm gene.to.exon.probeset text html latex example chm group.indices text html latex example chm pc text html latex example chm plot.gene text html latex example chm plot.gene.graph text html latex example chm probeset.stats text html latex example chm probesets.in.range text html latex example chm read.exon text html latex example chm select.probewise text html latex example chm splanova text html latex example chm splicing.index text html latex example chm x.rma text html latex chm xmapDatabase text html latex example chm xmapGene text html latex example chm Microsoft HTML Help Compiler 4.74.8702 Compiling d:\biocbld\bbs-2.0-bioc\meat\exonmap.Rcheck\00_pkg_src\exonmap\chm\exonmap.chm Compile time: 0 minutes, 0 seconds 22 Topics 97 Local links 18 Internet links 1 Graphic Created d:\biocbld\bbs-2.0-bioc\meat\exonmap.Rcheck\00_pkg_src\exonmap\chm\exonmap.chm, 43,700 bytes Compression decreased file by 45,206 bytes. preparing package exonmap for lazy loading Loading required package: affy Loading required package: Biobase Loading required package: tools Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()'. To cite Bioconductor, see 'citation("Biobase")' and for packages 'citation(pkgname)'. Loading required package: affyio Loading required package: simpleaffy Loading required package: genefilter Loading required package: survival Loading required package: splines Loading required package: RColorBrewer Loading required package: RMySQL Loading required package: DBI Loading required package: plier adding MD5 sums * DONE (exonmap)