Package: SNPchip

Version: 1.0.0

Command: /loc/biocbuild/bbs-2.0-bioc/R/bin/R CMD check SNPchip_1.0.0.tar.gz

RetCode: 0

Time: 243.7 seconds

Status: OK

CheckDir: SNPchip.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory '/extra/loc/biocbuild/bbs-2.0-bioc/meat/SNPchip.Rcheck'
* using R version 2.5.0 (2007-04-23)
* checking for file 'SNPchip/DESCRIPTION' ... OK
* this is package 'SNPchip' version '1.0.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'SNPchip' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating SNPchip-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating SNPchip-manual.tex ... OK
* checking SNPchip-manual.tex ... OK

* Installing *source* package 'SNPchip' ...
** R
** data
** inst
** save image
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: geneplotter
Loading required package: annotate
Loading required package: lattice
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Loading required package: oligo
Loading required package: affyio
Loading required package: splines
Loading required package: RSQLite
Loading required package: DBI
Loading required package: BufferedMatrix
Loading required package: BufferedMatrixMethods
This is the oligo package
** help
 >>> Building/Updating help pages for package 'SNPchip'
     Formats: text html latex example 
  AnnotatedSnpCallSet-class         text    html    latex   example
  AnnotatedSnpCopyNumberSet-class   text    html    latex   example
  AnnotatedSnpSet-class             text    html    latex   example
  addFeatureData-method             text    html    latex
  alleleA                           text    html    latex   example
  alleleB                           text    html    latex   example
  annSnpset                         text    html    latex   example
  centromere                        text    html    latex   example
  chromosome                        text    html    latex
  chromosomeAnnotation              text    html    latex   example
  chromosomeSize                    text    html    latex   example
  coerce-methods                    text    html    latex
  copyNumber                        text    html    latex
  cytoband                          text    html    latex   example
  dbSnpId                           text    html    latex   example
  enzyme                            text    html    latex   example
  fData                             text    html    latex   example
  fragmentLength                    text    html    latex   example
  getSnpAnnotation                  text    html    latex   example
  hapmap                            text    html    latex   example
  initialize-methods                text    html    latex
  plotCytoband                      text    html    latex   example
  plotSnp                           text    html    latex   example
  position                          text    html    latex
  show-methods                      text    html    latex
  showSummary                       text    html    latex   example
  smoothSnp                         text    html    latex   example
  summary-methods                   text    html    latex
  unsplitS4                         text    html    latex   example
** building package indices ...
* DONE (SNPchip)