CRAN Package Check Results for Maintainer ‘Edoardo Mancini <edoardo.mancini at roche.com>’

Last updated on 2026-01-14 12:49:34 CET.

Package	ERROR	NOTE	OK
admiralophtha	2	2	9

Package admiralophtha

Current CRAN status: ERROR: 2, NOTE: 2, OK: 9

Version: 1.3.0
Check: relative paths in package URLs
Result: NOTE Found the following (possibly) invalid URL: URL: ../reference/index.html From: inst/doc/admiralophtha.html Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 1.3.0
Check: examples
Result: ERROR Running examples in ‘admiralophtha-Ex.R’ failed The error most likely occurred in: > ### Name: derive_var_studyeye > ### Title: Derive Study Eye > ### Aliases: derive_var_studyeye > ### Keywords: der_adsl > > ### ** Examples > > library(tibble) > library(admiral) > > adsl <- tribble( + ~STUDYID, ~USUBJID, + "XXX001", "P01", + "XXX001", "P02", + "XXX001", "P03", + "XXX001", "P04", + "XXX001", "P05" + ) > > sc <- tribble( + ~STUDYID, ~USUBJID, ~SCTESTCD, ~SCSTRESC, + "XXX001", "P01", "FOCID", "OS", + "XXX001", "P01", "ACOHORT", "COHORT1", + "XXX001", "P02", "FOCID", "OD", + "XXX001", "P02", "ACOHORT", "COHORT3", + "XXX001", "P04", "FOCID", "OU", + "XXX001", "P05", "FOCID", "OD", + "XXX001", "P06", "FOCID", "OS" + ) > > derive_var_studyeye(adsl, sc) Error in left_join(dataset, add_data, by = vars2chr(by_vars), relationship = relationship) : could not find function "left_join" Calls: derive_var_studyeye ... tryCatch -> tryCatchList -> tryCatchOne -> doTryCatch Execution halted Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.3.0
Check: tests
Result: ERROR Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(admiralophtha) > > test_check("admiralophtha") Saving _problems/test-derive_var_studyeye-29.R Saving _problems/test-derive_var_studyeye-66.R [ FAIL 2 | WARN 0 | SKIP 0 | PASS 8 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-derive_var_studyeye.R:26:3'): derive_var_studyeye Test 1: STUDYEYE is derived correctly in normal case ── Error in `left_join(dataset, add_data, by = vars2chr(by_vars), relationship = relationship)`: could not find function "left_join" Backtrace: ▆ 1. ├─expected_output1 %>% select(-STUDYEYE) %>% ... at test-derive_var_studyeye.R:26:3 2. ├─admiralophtha::derive_var_studyeye(., sc1) 3. │ ├─... %>% mutate(STUDYEYE = seye_cat(STUDYEYE)) 4. │ └─admiral::derive_vars_merged(...) 5. │ └─base::tryCatch(...) 6. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) 7. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 8. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) 9. └─dplyr::mutate(., STUDYEYE = seye_cat(STUDYEYE)) ── Error ('test-derive_var_studyeye.R:63:3'): derive_var_studyeye Test 2: STUDYEYE is derived correctly when parsing non-standard SCTESTCD ── Error in `left_join(dataset, add_data, by = vars2chr(by_vars), relationship = relationship)`: could not find function "left_join" Backtrace: ▆ 1. ├─expected_output2 %>% select(-STUDYEYE) %>% ... at test-derive_var_studyeye.R:63:3 2. ├─admiralophtha::derive_var_studyeye(., sc2, "STDEYE") 3. │ ├─... %>% mutate(STUDYEYE = seye_cat(STUDYEYE)) 4. │ └─admiral::derive_vars_merged(...) 5. │ └─base::tryCatch(...) 6. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) 7. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 8. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) 9. └─dplyr::mutate(., STUDYEYE = seye_cat(STUDYEYE)) [ FAIL 2 | WARN 0 | SKIP 0 | PASS 8 ] Error: ! Test failures. Execution halted Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc